Sequence
atgc intronic sequence ATGC exonic sequenceGATGAGATCATTGCTGGTGGTGTTCAGGTTGAGCCACCAGGCATGCATATGATATATCTTCCATATTCTGATGATATCAGACACATCGAAGAGgcaagagagaactttgagttggttaaagatgctcttcagtaagactgactttataactaaggaattcaattacattttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0062g01170.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA20G39280.1 (Glycine max), 5'ss of exon 15
GATGAGATCATTGCTGGTGGTGTTCAGGTTGAGCCACCAGGCATGCATATGATATATCTTCCATATTCTGATGATATCAGACACATCGAAGAGgcaagaga----gaactttgagttggttaaagatgctctt---------cagtaagactgactttataactaaggaatt-caattacattttgcag-----------
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GAAGAAGTTATCCAATCAGGTGGTCAGATTGAGCCGCCTGGAATGCACATGATTTATCTTCCATATTCTGATGACATCAGATTTGTTGAAGAGgtagagaactgcaatatttgaacttgtttttaaaccttatatgtcaaaacaatgaaaactaagttttaaatatgaaattattgttaaggcgtgcatgatttttacag
upper sequence: Vv05s0062g01170.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: AT1G16970.1 (Arabidopsis thaliana), 5'ss of exon 14
GATGAGATCATTGCTGGTGGTGTTCAGGTTGAGCCACCAGGCATGCATATGATATATCTTCCATATTCTGATGATATCAGACACATCGAAGAGgcaagagagaa---ctttgagttggttaaagatgctcttcagtaagactgact-ttataactaaggaattcaattacattttg-cag
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GATGAAATCGAGAGTGATGGTGGTCAAGTGGAGCCACCAGGGATAAACATGATATATCTTCCATATGCTAATGATATTAGAGATATCGACGAGgcaagaaagaattgcttttgaaaagctacttggttccaacgttattaatgtttgttaaattttgactagttggtggaattttggcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30251085|gb|CB968818.1|CB968818EST: CGCATATGATATATCTTCCATATTCTGATGATATCAGACACATCGAAGAG CTTCATTCGGATATAACTGTCCCAACACCTCGAGCAACTGATGATCAAATA
genomic: TGCATATGATATATCTTCCATATTCTGATGATATCAGACACATCGAAGAGgcaagagaga ... cattttgcagCTTCATTCGGATATAACTGTCCCAACACCTCGAGCAACTGATGATCAAATA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATGAGATCATTGCTGGTGGTGTTCAGGTTGAGCCACCAGGCATGCATATGATATATCTTCCATATTCTGATGATATCAGACACATCGAAGAGgcaagagagaactttgagttggttaaagatgctcttcagtaagactgactttataactaaggaattcaattacattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA