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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggaacaattacatgataatccttctgcattagcttcaaactgaaaaaatctcaaacttgatgctattagttttgttcctcaaattctgttagttttattcctcacaatacttgttttgaacagTGGCGTCTTTGTGAGATTGGCCTTGAGGACTACTCTTTCGTTCTTTTAAGCAG

Basic information

species Vitis vinifera
transcript Vv05s0062g00890.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0062g00890.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G44540.1 (Glycine max), 3'ss of exon 7
gtggaacaattacatgataatccttctgcattagct--tcaaactgaaaaaatctcaaacttgatgctattagttttgttcctcaaattctgttagttttattcctcacaatacttgttttgaacagTGGCGTCTTTGTGAGATTGGCCTTGAGGACTACTCTTTCGTTCTTTTAAGCAG
         | |||   ||||  |  |  ||||  |   || ||    | | |||     ||   ||||||       | ||  ||  ||| ||  || |  || |        |||    | ||||||||| || ||||||||||| |||||||| ||||| |||||||||||||||||
--------gtgacac--taattttattcaattatttagccagaccttgagagtctgg---tta--gctatttaaagaatgccagaacatcttttgattctcatcttt------tttggaaagtacagTGGCGCCTCTGTGAGATTGGACTTGAGGATTACTCATTCGTTCTTTTAAGCAG

upper sequence: Vv05s0062g00890.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT5G26570.1 (Arabidopsis thaliana), 3'ss of exon 8
gtggaacaattacatgataatccttctgcattagcttcaaactgaaaaaatctcaaacttgatgctattagttttgttcctcaaattctgttagttttattcctcacaatacttgttttgaacagTGGCGTCTTTGTGAGATTGGCCTTGAGGACTACTCTTTCGTTCTTTTAAGCAG
                                             |   || | ||||        |||| |  ||| ||   ||||   ||| |  |||   |     | || ||||  |  ||||||| ||||||||||| ||||| |||||||||| ||| |||||  |||||||
------------------------------------------gtgagctattttaaacaatccagcatta-tcatgtacc---aatttatttactaatatagtt-----tcctcgtttc-attagTGGCGCCTTTGTGAGATCGGCCTCGAGGACTACTTTTTTGTTCTACTAAGCAG

upper sequence: Vv05s0062g00890.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: EFJ22307 (Selaginella moellendorffii), 3'ss of exon 7
gtggaacaattacatgataatccttctgcattagcttcaaactgaaaaaatctcaaacttgatgctattagttttgttcctcaaattctgttagttttattcctcacaatacttgttttgaacagTGGCGTCTTTGTGAGATTGGCCTTGAGGACTACTCTTTCGTTCTTTTAAGCAG
                                                                   | |    ||    | |   | ||   || | | ||  |    | |||||||||   ||||||||||||  |||||||||||||||||||||| ||||||  | || |||||
------------------------------------------------------------------gtaaaggctgcagatgagtatttgc--gtatcagtcagc----ttcttgttttg--tagTGGCGTCTTTCCGAGATTGGCCTTGAGGACTACTTTTTCGTCGTGTTGAGCAG

upper sequence: Vv05s0062g00890.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: EFJ25586 (Selaginella moellendorffii), 3'ss of exon 7
gtggaacaattacatgataatccttctgcattagcttcaaactgaaaaaatctcaaacttgatgctattagttttgttcctcaaattctgttagttttattcctcacaa-tacttgttttgaacagTGGCGTCTTTGTGAGATTGGCCTTGAGGACTACTCTTTCGTTCTTTTAAGCAG
                                                                        |     |  || ||     || ||   |  |  |||  | |||||||||   ||||||||||||  |||||||||||||||||||||| |||||| || || |||||
-----------------------------------------------------------------------gtaaaggctgcagatg--agtatttgcgtatcagacagcttcttgttttg--tagTGGCGTCTTTCCGAGATTGGCCTTGAGGACTACTTTTTCGTCCTGTTGAGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttgttcctcaaattctgttagttttattcctcacaatacttgttttgaacagTGGCGTCTTTGTGAGATTGGCCTTGAGGACTACTCTTTCGTTCTTTTAAGCAG
                              tcctcac  putative branch site (score: 2)
                                         cttgtttt  putative PPT
                    ttagttttatt  TA-rich tract