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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAATAGAGGTCTCTTATCTTCAGGGATCATGGCTTCTTATATTGTTTTCCTCTGTTGGTCTGCTATCAGAAGgttagaaatctctcccaaacattctaagtcactggcttggactcatttcgagtattatgccatttcacttagctgccaaagactttaaaaattttccag

Basic information

species Vitis vinifera
transcript Vv05s0051g00380.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0051g00380.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G018756_T02 (Zea mays), 5'ss of exon 7
GTCAATAGAGGTCTCTTATCTTCAGGGATCATGGCTTCTTATATTGTTTTCCTCTGTTGGTCTGCTATCAGAAGgttag---aaatctctcccaaacattctaa-gtcactggcttggactcatttcgagtattatgccatttcacttagctgccaaagactttaaaaattttccag--------------------------------------------------------------------------------
|| ||    |||||  | ||||| |||||||||  ||| |||||||||||||| |||||||||||  ||   |||||||     ||| |    ||  |||  || |    |   || | |     | |       | ||| |||  | |      | |  || |   ||| || |                                                                                  
GTTAACGAGGGTCTTCTCTCTTCTGGGATCATGAGTTCATATATTGTTTTCCTTTGTTGGTCTGCACTCCACAGgttagtctgcatcacctggaactattgaaaaggttgtaattttggcattcctaggaagcgtttccacttccataatgcaaaatattctgtgctaatatttctttttccattcactgttctgcaaacatagccttgtatagtgcagtttgcttgatgttaatttcatactatgcgcatgtgtag

upper sequence: Vv05s0051g00380.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA20G19930.1 (Glycine max), 5'ss of exon 7
GTCAATAGAGGTCTCTTATCTTCAGGGATCATGGCTTCTTATATTGTTTTCCTCTGTTGGTCTGCTATCAGAAGgttagaaatctct--cccaaacat-tctaagtcactggcttggactcatttcgagtattatgccatttcacttagctgccaaagactttaaaaattttccag
|| ||||||||||| ||||||||||| || |||||||||||  |||||||||| ||||||  ||| |||||||||| || | |||||  |||| | || ||||   |  |   ||||  | ||||     |  ||  || ||   |    |      |||||   |   | ||   
GTTAATAGAGGTCTTTTATCTTCAGGAATTATGGCTTCTTACGTTGTTTTCCTTTGTTGGAATGCAATCAGAAGgtcaggattctctaacccataaatctctataacggttctttgg-ttaattttagacaccatatcacttttatatattagttctgacttctgagggtctctt-

upper sequence: Vv05s0051g00380.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT2G33205.1 (Arabidopsis thaliana), 5'ss of exon 7
---GTCAATAGAGGTCTCTTATCTTCAGGGATCATGGCTTCTTATATTGTTTTCCTCTGTTGGTCTGCTATCAGAAGgttagaaatctctcccaaacattctaagtcactggcttggactcatttcgagtattatgccatttcacttagctgccaaagactttaaaaattttccag
      ||||||||||| || ||||| ||||| ||||||||||| ||||| ||||| ||||||||||| |||||||||| |  |        |||| |     |    |||  ||    |  ||| |    | |   ||||  ||| |  |    |||  ||  |  |        
GTGAAGAATAGAGGTCTTTTGTCTTCCGGGATTATGGCTTCTTACATTGTCTTCCTATGTTGGTCTGCGATCAGAAGgtaaaga--------caaatac----aacatctgatttttgtttgtttagttcttcaaagcatt--actaaagta--gaagttttgtatcag-------