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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTGATGCTGATGGGAGTCAAGGGATACAATTCAATGAGTTCATTGTTATTCTGTGTCTCATCTATCTCCTAATGGAACCTTCCACCTCTACTCATCCTgtatccccaataaacttaataattctttttttattttaaatttcttgtgtcggtggcatgggctaaaatcatttagggatatgtttcag

Basic information

species Vitis vinifera
transcript Vv05s0029g00070.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0029g00070.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G24110.1 (Arabidopsis thaliana), 5'ss of exon 2
CTGTGATGCTGATGGGAGTCAAGGGATACAATTCAATGAGTTCATTGTTATTCTGTGTCTCATCTATCTCCTAATGGAACCTTCCACCTCTACTCATCCTgtatccccaataaacttaataattctttttttattttaaatttcttgtgtcggtggcatgggctaaaatcatttagggatatgtttcag
 ||||| | |||||| ||  |||||||||||||||||||||| || ||  |||| |||||||||||||| ||   | ||||||||   |||    |||| | | |   |||||  | | | |        | ||  | |||      | | |      |  |||||||| || ||| | | | | | ||
GTGTGACGTTGATGGAAGCAAAGGGATACAATTCAATGAGTTTATAGTCCTTCTCTGTCTCATCTATCTTCTGGCGAAACCTTCC---TCTGA--ATCCAGCA-CGgtaataa--tcagtgaca------tgatgatgaat-----atattgactatttaagctaaaat-atgtagtg-tgtttcttag