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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcacttttttattctttattagaattcattgtatttccataaatgcttcccctcttgtttttcttgatgcaccaagacaattttgctgaaattcaacctcttttttaccttcttagATCACACATCGTGCATTCAAGGGGTGGATGCTGTCCTTTCCGATACCAATAATCCATCCACTTCTTTCTGTGGACAGGGGTGCCGGGAG

Basic information

species Vitis vinifera
transcript Vv05s0020g03420.t01
intron # 3
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttgatgcaccaagacaattttgctgaaattcaacctcttttttaccttcttagATCACACATCGTGCATTCAAGGGGTGGATGCTGTCCTTTCCGATACCAATAATCCATCCACTTCTTTCTGTGGACAGGGGTGCCGGGAG
 tcttgat  putative branch site (score: 4)
                              ttcaacctctttttta  putative PPT
                                     tctttttta  TA-rich tract