1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ATACGATTGGAGCTTGGCCAGAAGTGAGAAACGAGACAGATATGCCTGGCCTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAGgtatggccaaaatcaattccttctctaccttcttatttatttatttatttattttaattactattatatttctttttaattagatagccctagatttgat...
species | Vitis vinifera |
transcript | Vv04s0008g01770.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAG GAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCTEST: gi|349823575|gb|FQ414985.1|FQ414985
genomic: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAGgtatggccaa ... ttcattgcagGAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCT
EST: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAG GAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCTEST: gi|351025083|gb|FQ433500.1|FQ433500
genomic: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAGgtatggccaa ... ttcattgcagGAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCT
EST: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAG GAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCTEST: gi|351043372|gb|FQ451424.1|FQ451424
genomic: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAGgtatggccaa ... ttcattgcagGAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCT
EST: CTTTCGAGGTCGAGAAAGCAGTAACTCCCACAGAGGAGCCTCCTGCTCAG GAACCGGAAGATGTGAGGCCTAATATTTTAGTGGGATACTTCTTGTTTGCTEST: gi|351017918|gb|FQ439084.1|FQ439084
genomic: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAGgtatggccaa ... ttcattgcagGAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCT
EST: CTTTCGAGGTCGAGAAAGCAGTAACTCCCACAGAGGAGCCTCCTGCTCAG GAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCTEST: gi|351027426|gb|FQ444675.1|FQ444675
genomic: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAGgtatggccaa ... ttcattgcagGAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCT
EST: CTTTCGAGGTCGAGAAAGCAGTAACTCCCACAGAGGAGCCTCCTGCTCAG GAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCTEST: gi|351022289|gb|FQ445064.1|FQ445064
genomic: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAGgtatggccaa ... ttcattgcagGAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCT
EST: CTTTCGAGGTCGAGAAAGCAGTAACTCCCACAGAGGAGCCTCCTGCTCAG GAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCTEST: gi|349829060|gb|FQ419592.1|FQ419592
genomic: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAGgtatggccaa ... ttcattgcagGAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCT
EST: CTTTCGAGGTCGAGAAAGTAGTAACTCCCACAGAGGAGCCTCCTGCTCAG GAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCTEST: gi|351024208|gb|FQ423631.1|FQ423631
genomic: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAGgtatggccaa ... ttcattgcagGAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCT
EST: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAG GAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCTEST: gi|351031099|gb|FQ444926.1|FQ444926
genomic: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAGgtatggccaa ... ttcattgcagGAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCT
EST: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAG GAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCTEST: gi|349823831|gb|FQ415242.1|FQ415242
genomic: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAGgtatggccaa ... ttcattgcagGAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCT
EST: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAG GAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCTEST: gi|351029729|gb|FQ427569.1|FQ427569
genomic: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAGgtatggccaa ... ttcattgcagGAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCT
EST: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAG GAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCTEST: gi|32270228|gb|CD719387.1|CD719387
genomic: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAGgtatggccaa ... ttcattgcagGAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCT
EST: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAG GAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCTEST: gi|349832423|gb|FQ420984.1|FQ420984
genomic: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAGgtatggccaa ... ttcattgcagGAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCT
EST: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAG GAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCTEST: gi|351041469|gb|FQ431495.1|FQ431495
genomic: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAGgtatggccaa ... ttcattgcagGAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCT
EST: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAG GAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCTEST: gi|351049033|gb|FQ431577.1|FQ431577
genomic: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAGgtatggccaa ... ttcattgcagGAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCT
EST: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTTAG GAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCTEST: gi|32269003|gb|CD718162.1|CD718162
genomic: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAGgtatggccaa ... ttcattgcagGAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCT
EST: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAG GAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCTEST: gi|351014460|gb|FQ437462.1|FQ437462
genomic: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAGgtatggccaa ... ttcattgcagGAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCT
EST: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAG GAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCTEST: gi|351014516|gb|FQ437518.1|FQ437518
genomic: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAGgtatggccaa ... ttcattgcagGAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCT
EST: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAG GAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCTEST: gi|351024758|gb|FQ430583.1|FQ430583
genomic: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAGgtatggccaa ... ttcattgcagGAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCT
EST: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAG GAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCTEST: gi|351027302|gb|FQ444551.1|FQ444551
genomic: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAGgtatggccaa ... ttcattgcagGAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCT
EST: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAG GAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCTEST: gi|351021803|gb|FQ437188.1|FQ437188
genomic: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAGgtatggccaa ... ttcattgcagGAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCT
EST: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAG GAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCTEST: gi|351016245|gb|FQ446105.1|FQ446105
genomic: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAGgtatggccaa ... ttcattgcagGAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCT
EST: CTTTCGAGGTCGAGAAAGCAAA--CTCCCACAGAGGAGCCTCCTGCTCAG GAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCTEST: gi|32268551|gb|CD717710.1|CD717710
genomic: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAGgtatggccaa ... ttcattgcagGAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCT
EST: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAG GAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCTEST: gi|351027563|gb|FQ446726.1|FQ446726
genomic: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAGgtatggccaa ... ttcattgcagGAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCT
EST: CTTTCGAGGTCGAGAAAGCAAA--CTCCCACAGAGGAGCCTCCTGCTCAG GAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCTEST: gi|351019064|gb|FQ426563.1|FQ426563
genomic: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAGgtatggccaa ... ttcattgcagGAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCT
EST: CTTTCGAGGTCGAGAAAGCAGTAACTCCCACAGAGGAGCCTCCTGCTCAG GAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCTEST: gi|349826520|gb|FQ418611.1|FQ418611
genomic: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAGgtatggccaa ... ttcattgcagGAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCT
EST: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAG GAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTTTTGTTTGCTEST: gi|349829990|gb|FQ420250.1|FQ420250
genomic: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAGgtatggccaa ... ttcattgcagGAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCT
EST: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAG GAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCT
genomic: CTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAGgtatggccaa ... ttcattgcagGAACCGGAAGATGTGAGGCCTACTATTTTAGTGGGATACTTCTTGTTTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACGATTGGAGCTTGGCCAGAAGTGAGAAACGAGACAGATATGCCTGGCCTTTCGAGGTCGAGAAAGCAAAAACTCCCACAGAGGAGCCTCCTGCTCAGgtatggccaaaatcaattccttctctaccttcttatttatttatttatttattttaattactattatatttctttttaattagatagccctagatttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctacc