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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcgtttttctttttccttttcgtagtcctccatcgtgttttaatcaattcaacgcagatctgtgacacacttctcttactaagtataagatttttctggaatgaatttttttcccccatattaatccagGTTTTTGGGCGCGAGAGATTAAATGGGCATTATGGGTCGAGTGCATTTGTTGTTGGAAACACACTTTCTTCAATACCATACTTGCTAGTGATTTCTCTGA

Basic information

species Vitis vinifera
transcript Vv03s0017g01290.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71889774|gb|DT038829.1|DT038829
EST:     TAACTTTCATGACTATTGGTGGATTCCCTTCTTTTGTGGAAGACATGAAG                         GTTTTTGGGCGCGAGAGATTAAATGGGCATTATGGGTCGAGTGCGTTTGTT
genomic: TAACTTTCATGACTATTGGTGGATTCCCTTCTTTTGTGGAAGACATGAAGgtatcgtttt ... attaatccagGTTTTTGGGCGCGAGAGATTAAATGGGCATTATGGGTCGAGTGCATTTGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttactaagtataagatttttctggaatgaatttttttcccccatattaatccagGTTTTTGGGCGCGAGAGATTAAATGGGCATTATGGGTCGAGTGCATTTGTTGTTGGAAACACACTTTCTTCAATACCATACTTGCTAGTGATTTCTCTGA
                                            tattaat  putative branch site (score: 2)
                               tttttttcccccatat  CT-rich tract
     taagtataagattttt  TA-rich tract