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GAGGCTCGAGTATCTGACTTTGGACTTGCTAAATTGTTGGAGGATGAGGAATCTCATATTACAACCATTGTAGCAGGAACTTTTGGTTATTTGGCTCCAGgtgagtaatgtagtaaactgttcatctcacatattatatttaagaatgttccaattggcacttggcttttgatagacttgatggaatggtagaaaatgat...
species | Vitis vinifera |
transcript | Vv02s0087g00170.t01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: ATCTCATATTACAACCATTGTAGCAGGAACTTTTGGTTATTTGGCTCCAG AGTATATGCAAAGCGGTAGAGCAACAGAGAAAACCGACATTTATAGTTTTGEST: gi|110696915|gb|EE073446.1|EE073446
genomic: ATCTCATATTACAACCATTGTAGCAGGAACTTTTGGTTATTTGGCTCCAGgtgagtaatg ... ccatctgcagAGTATATGCAAAGCGGTAGAGCAACAGAGAAAACCGACATTTATAGTTTTG
EST: ATCTCATATTACAACCATTGTAGCAAGAACTTTTGGTTATTTGGCTCCAG AGTATATGCAAAGCGGTAGAGCAACAGAGAAAACCGACATTTATAGTTTTGEST: gi|27580887|gb|CB003582.1|CB003582
genomic: ATCTCATATTACAACCATTGTAGCAGGAACTTTTGGTTATTTGGCTCCAGgtgagtaatg ... ccatctgcagAGTATATGCAAAGCGGTAGAGCAACAGAGAAAACCGACATTTATAGTTTTG
EST: ATCTCATATTACAACCATTGTAGCAGGAACTTTTGGTTATTTGGCTCCAG AGTATATGCAAAGCGGTAGAGCAACAGAGAAAACCGACATTTATAGTTTTGEST: gi|110703464|gb|EE080335.1|EE080335
genomic: ATCTCATATTACAACCATTGTAGCAGGAACTTTTGGTTATTTGGCTCCAGgtgagtaatg ... ccatctgcagAGTATATGCAAAGCGGTAGAGCAACAGAGAAAACCGACATTTATAGTTTTG
EST: ATCTCATATTACAACCATTGTAGCAGGAACTTTTGGTTATTTGGCTCCAG AGTATATGCAAAGCGGTAGAGCAACAGAGAAAACCGACATTTATAGTTTTGEST: gi|30327001|gb|CD010263.1|CD010263
genomic: ATCTCATATTACAACCATTGTAGCAGGAACTTTTGGTTATTTGGCTCCAGgtgagtaatg ... ccatctgcagAGTATATGCAAAGCGGTAGAGCAACAGAGAAAACCGACATTTATAGTTTTG
EST: ATCTCATATTACAACCATTGTAGCAGGAACTTTTGGTTATTTGGCTCCAG AGTATATGCAAAGCGGTAGAGCAACAGAGAAAACCGACATTTATAGTTTTGEST: gi|156739111|gb|EV243232.1|EV243232
genomic: ATCTCATATTACAACCATTGTAGCAGGAACTTTTGGTTATTTGGCTCCAGgtgagtaatg ... ccatctgcagAGTATATGCAAAGCGGTAGAGCAACAGAGAAAACCGACATTTATAGTTTTG
EST: ATCTCATATTACAACCATTGTAGCAGGAACTTTTGGTTATTTGGCTCCAG AGTATATGCAAAGCGGTAGAGCAACAGAGAAAACCGACATTTATAGTTTTGEST: gi|30303383|gb|CB980177.1|CB980177
genomic: ATCTCATATTACAACCATTGTAGCAGGAACTTTTGGTTATTTGGCTCCAGgtgagtaatg ... ccatctgcagAGTATATGCAAAGCGGTAGAGCAACAGAGAAAACCGACATTTATAGTTTTG
EST: ATCTCATATTACAACCATTGTAGCAGGAACTTTTGGTTATTTGGCTCCAG AGTATATGCAAAGCGGTAGAGCAACAGAGAGAACCGACATTTATAGTTTTGEST: gi|30303577|gb|CB980371.1|CB980371
genomic: ATCTCATATTACAACCATTGTAGCAGGAACTTTTGGTTATTTGGCTCCAGgtgagtaatg ... ccatctgcagAGTATATGCAAAGCGGTAGAGCAACAGAGAAAACCGACATTTATAGTTTTG
EST: ATCTCATATTACAACCATTGTAGCAGGAACTTTTGGTTATTTGGCTCCAG AGTATATGCAAAGCGGTAGAGCAACAGAGAGAACCGACATTTATAGTTTTGEST: gi|110368197|gb|EC932166.1|EC932166
genomic: ATCTCATATTACAACCATTGTAGCAGGAACTTTTGGTTATTTGGCTCCAGgtgagtaatg ... ccatctgcagAGTATATGCAAAGCGGTAGAGCAACAGAGAAAACCGACATTTATAGTTTTG
EST: ATCTCATATTACAACCATTGTAGCAGGAACTTTTGGTTATTTGGCTCCAG AGTATATGCAAAGCGGTAGAGCAACAGAGAAAACCGACATTTATAGTTTTG
genomic: ATCTCATATTACAACCATTGTAGCAGGAACTTTTGGTTATTTGGCTCCAGgtgagtaatg ... ccatctgcagAGTATATGCAAAGCGGTAGAGCAACAGAGAAAACCGACATTTATAGTTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGCTCGAGTATCTGACTTTGGACTTGCTAAATTGTTGGAGGATGAGGAATCTCATATTACAACCATTGTAGCAGGAACTTTTGGTTATTTGGCTCCAGgtgagtaatgtagtaaactgttcatctcacatattatatttaagaatgttccaattggcacttggcttttgatagacttgatggaatggtagaaaatgat
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