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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATGTTCAAGGCAACGTTTATGCATTTGGTGTACTTTTGCTGGAGATTATGAGTGGGAGACCTCCATACTGCAAGGACAAGGGTTGCTTGGTTGAATGGgtaagaaaccttctgaaaattgaatatttgttaagcttcccaccaaagtaatcttgaagggattaattgtcgggagcgaaaaactagagttccgaccaaatatgcctaaaaattgaatccgtttctgctgcag

Basic information

species Vitis vinifera
transcript Vv02s0025g03700.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g03700.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA08G01640.1 (Glycine max), 5'ss of exon 11
AGATGTTCAAGGCAACGTTTATGCATTTGGTGTACTTTTGCTGGAGATTATGAGTGGGAGACCTCCATACTGCAAGGACAAGGGTTGCTTGGTTGAATGGgtaagaaaccttctgaaaatt-gaatat-----ttgttaagcttc-ccaccaaagtaatcttgaagggattaattgtcgggagcgaaaaactagagttccgaccaaatatgcctaaaaattgaatccgtttctgctgcag-----------------------------------
 ||     |||| ||| | ||||| |||| ||||||| |  ||||||| || ||||||||||||||||||||||||||||| || | |||||| || |||||||||||  | || |||||| ||||||     || | | || ||   ||  ||   ||  ||||   |    || ||   ||    |||    |  |    | | |  | | || |   | ||  | | | |  |                                       
CGACACCAAAGGAAACATCTATGCTTTTGCTGTACTTCTATTGGAGATAATCAGTGGGAGACCTCCATACTGCAAGGACAAAGGGTACTTGGTGGATTGGgtaagaaatttcctaaaaatttgaatatatttcttttaaggcatcattacttaaagcattatgaatccaaattttctctttagttgtaaaaagtaactt-acctataagtacttatatgataaacacttatttaataagccattaagccctaaattttaaactcatgtggtgcag

upper sequence: Vv02s0025g03700.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA05G37960.1 (Glycine max), 5'ss of exon 12
AGATGTTCAAGGCAACGTTTATGCATTTGGTGTACTTTTGCTGGAGATTATGAGTGGGAGACCTCCATACTGCAAGGACAAGGGTTGCTTGGTTGAATGGgtaagaaaccttctgaaaatt-gaatatttgttaag----cttcccaccaaagtaatcttgaagggattaattgtcgggagcgaaaaactagagttccgaccaaatatgcctaaaaattgaatccgtttctgctgcag---------------------------
 ||     |||| ||| ||||||| ||||  |||||| |  ||||||| || ||||||||||||||||||||||||||||| || | |||||| || |||||||||||  | || ||| || |||| | | |||||    | |  |   |||  |   ||   |     |||| ||      |    |  |         | | |  | | || |   | ||  | | | |  |                               
CGACACCAAAGGAAACATTTATGCTTTTGCAGTACTTCTATTGGAGATAATCAGTGGGAGACCTCCATACTGCAAGGACAAAGGGTACTTGGTGGATTGGgtaagaaatttcctaaaattttgaatttcttttaaggcatcattacttaaaaagagcattatggatccaaattttctcctttgttgtaaaaataacttatctataagtacttatatgataaacacttgtttaataagtctttaatgttaaactcatgtggtgcag

upper sequence: Vv02s0025g03700.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA11G02690.1 (Glycine max), 5'ss of exon 12
AGATGTTCAAGGCAACGTTTATGCATTTGGTGTACTTTTGCTGGAGATTATGAGTGGGAGACCTCCATACTGCAAGGACAAGGGTTGCTTGGTTGAATGGgtaagaaaccttctgaaaattgaatatttgttaagctt---cccaccaaagtaatcttgaagggattaattgtcgggagcgaaaaactagagttccgaccaaatatgcctaaaaattgaatccgtttctgctgcag
 |||    |||| |||   | ||| ||||| |||||| |||| ||||| || || ||||||||||||||||| |||||||| || | |||||| || |||||||||||| |||  ||| |||| | |||   |||  |   | |     | ||| ||  || | ||  ||  |  |  ||                                                        
TGATACCAAAGGAAACACATTTGCTTTTGGGGTACTTCTGCTAGAGATAATCAGCGGGAGACCTCCATACTGTAAGGACAAAGGGTACTTGGTGGACTGGgtaagaaactttccaaaatttga-tgtttaaaaagagtgaactctttttactaagctgtaacgtatatat-atgtgctgcag------------------------------------------------------

upper sequence: Vv02s0025g03700.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA01G42770.1 (Glycine max), 5'ss of exon 13
AGATGTTCAAGGCAACGTTTATGCATTTGGTGTACTTTTGCTGGAGATTATGAGTGGGAGACCTCCATACTGCAAGGACAAGGGTTGCTTGGTTGAATGGgtaagaaaccttctgaaaattgaatatttgttaagcttcccaccaaagtaatcttgaagggattaattgtcgggagcgaaaaactagagttccgaccaaatatgc-ctaaaaattgaa--tccgtttctgctgcag
 |||    |||| ||| | | ||| ||||| |||||| |||| ||||| || || ||||||||||||||||| |||||||| || | |||||| || |||||||||||| | | ||||        |||||| |  ||      ||||||    |  |    || |    |   |  |||| | |  |  |     | ||| ||   |     || ||  |   | | ||||||||
TGATACCAAAGGAAACATATTTGCTTTTGGGGTACTTCTGCTAGAGATAATCAGCGGGAGACCTCCATACTGTAAGGACAAAGGGTACTTGGTGGACTGGgtaagaaacttcccgaaa--------tttgttgatgttta----aaagtatagctttacaacttcaca--caacactgaaagagtgaacctttttactaatctgtatttgttgttaaacgtatatatgtgctgcag

upper sequence: Vv02s0025g03700.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT5G41180.1 (Arabidopsis thaliana), 5'ss of exon 12
AGATGTTCAAGGCAACGTTTATGCATTTGGTGTACTTTTGCTGGAGATTATGAGTGGGAGACCTCCATACTGCAAGGACAAGGGTTGCTTGGTTGAATGGgtaaga--aacctt----------ctgaaaattgaatatttgt--taagcttcccaccaaagtaatcttgaaggg--attaattgtcgggagcgaaaaactagagttccgaccaaatatgcctaaaaattgaatccgtttctgctgcag
 ||| | ||||| ||  | ||  |||||||  ||||||||||||| ||| | || || |||||| | || ||| | ||||  ||||||||||||||||||||||||  | | ||          || |||  ||| || || |  ||||  || | |        ||||   ||   |    || ||  | |    |  ||   | |  ||   || |  |||||| |||| |                
GGATTTACAAGGGAATATCTACTCATTTGGCATACTTTTGCTGGAAATTGTAAGCGGAAGACCTTCTTATTGCCAAGACAGAGGTTGCTTGGTTGAATGGgtaagaatagcttttctctataagcttaaagctgagtacttataataagtctctctct----ctctcttagcggtttacgtgttttcatgcgtttgatgctgaggatttgattcaa-actcctaaatattgcag---------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110390182|gb|EC955077.1|EC955077
EST:     TGAGTGGGAGACCTCCATACTGCAAGGACAAGGGTTGCTTGGTTGAATGG                         GCTAGGGACTATCTTGACCTACCAGAAGCAATGTCATATGTGGTGGATCCT
genomic: TGAGTGGGAGACCTCCATACTGCAAGGACAAGGGTTGCTTGGTTGAATGGgtaagaaacc ... tctgctgcagGCTAGGGACTATCTTGACCTACCAGAAGCAATGTCATATGTGGTGGATCCT
EST: gi|32268876|gb|CD718035.1|CD718035
EST:     TGAGTGGGAGACCTCCATACTGCAAGGACAAGGGTTTCTTGGTTGAATGG                         GCTAGGGACTATCTTGACCTACCAGAAGCAATGTCATATGTGGTGGATCCT
genomic: TGAGTGGGAGACCTCCATACTGCAAGGACAAGGGTTGCTTGGTTGAATGGgtaagaaacc ... tctgctgcagGCTAGGGACTATCTTGACCTACCAGAAGCAATGTCATATGTGGTGGATCCT
EST: gi|33401830|gb|CF207457.1|CF207457
EST:     TGAGTGGGAGACCTCCATACTGCAAGGACAAGGGTTGCTTGGTTGAATGG                         GCTAGGGACTATCTTGACCTACCAGAAGCAATGTCATATGTGGTGGATCCT
genomic: TGAGTGGGAGACCTCCATACTGCAAGGACAAGGGTTGCTTGGTTGAATGGgtaagaaacc ... tctgctgcagGCTAGGGACTATCTTGACCTACCAGAAGCAATGTCATATGTGGTGGATCCT
EST: gi|110428814|gb|EC995295.1|EC995295
EST:     TGAGTGGGAGACCTCCATACTGCAAGGACAAGGGTTGCTTGGTTGAATGG                         GCTAGGGACTATCTTGACCTACCAGAAGCAATGTCATATGTGGTGGATCCT
genomic: TGAGTGGGAGACCTCCATACTGCAAGGACAAGGGTTGCTTGGTTGAATGGgtaagaaacc ... tctgctgcagGCTAGGGACTATCTTGACCTACCAGAAGCAATGTCATATGTGGTGGATCCT
EST: gi|32268886|gb|CD718045.1|CD718045
EST:     TGAGTGGGAGACCTCCATACTGCAAGGACAAGGGTTTCTTGGTTGAATGG                         GCTAGGGACTATCTTGACCTACCAGAAGCAATGTCATATGTG
genomic: TGAGTGGGAGACCTCCATACTGCAAGGACAAGGGTTGCTTGGTTGAATGGgtaagaaacc ... tctgctgcagGCTAGGGACTATCTTGACCTACCAGAAGCAATGTCATATGTG
EST: gi|32249850|gb|CD715669.1|CD715669
EST:     TGAGTGGGAGACCTCCATACTGCAAGGACAAGGGTTTCTTGGTTGAATGG                         GCTAGGGACTATCTTGACCTACCAGAAGCAATGTCATATGTGGTGGATCCT
genomic: TGAGTGGGAGACCTCCATACTGCAAGGACAAGGGTTGCTTGGTTGAATGGgtaagaaacc ... tctgctgcagGCTAGGGACTATCTTGACCTACCAGAAGCAATGTCATATGTGGTGGATCCT
EST: gi|110363980|gb|EC927616.1|EC927616
EST:     TGAGTGGGAGACCTCCATACTGCAAGGACAAGGGTTGCTTGGTTGAATGG                         GCTAGGGACTATCTTGACCTACCAGAAGCAATGTCATATGTGGTGGATCCT
genomic: TGAGTGGGAGACCTCCATACTGCAAGGACAAGGGTTGCTTGGTTGAATGGgtaagaaacc ... tctgctgcagGCTAGGGACTATCTTGACCTACCAGAAGCAATGTCATATGTGGTGGATCCT
EST: gi|22014705|gb|BQ799739.1|BQ799739
EST:     TGAGTGGGAGACCTCCATACTGCAAGGACAAGGGTTGCTTGGTTGAATGG                         GCTAGGGACTATCTTGACCTACCAGAAGCAATGTCATATGTGGTGGATCCT
genomic: TGAGTGGGAGACCTCCATACTGCAAGGACAAGGGTTGCTTGGTTGAATGGgtaagaaacc ... tctgctgcagGCTAGGGACTATCTTGACCTACCAGAAGCAATGTCATATGTGGTGGATCCT