Sequence
atgc intronic sequence ATGC exonic sequenceTTACTTGGATTATCCGAGTCTGTGCCGGCTTTCGATGACCAATTCGTTAATGCGGAAGGCTGCGAATGATGATAATGCATGGAAAGCGCTATATCACAAGgtgatttctttgttctttgccatgcatgtttgtattttgaacttatttatgtttgtttctgttgaatttcgagtttcttgtggttttattcaactaattt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g01680.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA05G36770.1 (Glycine max), 5'ss of exon 1
TTACTTGGATTATCCGAGTCTGTGCCGGCTTTCGATGACCAATTCGTTAATGCGGAAGGCTGCGAATGATGATAATGCATGGAAAGCGCTATATCACAAGgtgatttctttgttctttgccatgcatgtttgtattttgaacttattta---tgtttgtttctgttgaatttcgagtttcttgtggttttattcaactaattt----
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TTACTTGGATTATCCCAGTCTCTGTCGCCTCTCGATGACCAATTCGTTGATGCGAAAGGCTGCGAATGATGATAATGCTTGGAAGGCCCTTTATCACAAGgtatttac---atatattattactcaattctaattctcgtgcttcttttaactgttatcttatgctaaat----agacacccaaaatcgtgaatgagtgactgttag
upper sequence: Vv02s0025g01680.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G02790.1 (Glycine max), 5'ss of exon 1
TTACTTGGATTATCCGAGTCTGTGCCGGCTTTCGATGACCAATTCGTTAATGCGGAAGGCTGCGAATGATGATAATGCATGGAAAGCGCTATATCACAAGgtgatttctttgttctttgccatgcatgtttgtattttgaacttatttatgtttgtttctgttgaatttcgagtttcttgtggttttattcaactaattt------
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TTACTTGGATTATCCGAGTCTCTGTCGCCTCTCCATGACAAATTCGTTGATGCGAAAGGCTGCGAATGATGATAATGCTTGGAAGGCCCTTTATCACAAGgta--tacaatattact-attactcaattctaattctcgtgcttctttttattg--ttcagttgtttgtt-accttatgctaaatagacccccaaaatcgtgaatg
upper sequence: Vv02s0025g01680.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT4G10925.1 (Arabidopsis thaliana), 5'ss of exon 2
TTACTTGGATTATCCGAGTCTGTGCCGGCTTTCGATGACCAATTCGTTAATGCGGAAGGCTGCGAATGATGATAATGCATGGAAAGCGCTATATCACAAGgtgatttc-tttgttctttgc-catgcatgtttgtattttgaactt---atttatgtttgtttct--gttgaatttcgagtttcttgtggttttattcaactaattt-------------------------------------------------------------
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TTACTTGGATTATCCCAGTCTCTGTCGCTTATCCATGACTAATTCCTTGATGAGGAAAGCTGCTAATGATGATAATGCTTGGAAAGCTCTTTATCACAAGgtaattagattcactaatcactcatttgtattagctttgtgtattggaaattcagaaatgattctaggttaaaagatgtgtattcttagcagtttctggattagtgtgtgttttcgtgaatggtgctattttgtttaatgcttctcttacttttttctcatgtgttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110380726|gb|EC946014.1|EC946014EST: TGCGGAAGGCTGCGAATGATGATAATGCATGGAAAGCGCTATATCACAAG GATTTCACATTGGAACAAGACAGTGTGACACCAACCAATGGATGGAAGGCT
genomic: TGCGGAAGGCTGCGAATGATGATAATGCATGGAAAGCGCTATATCACAAGgtgatttctt ... ttgtttttagGATTTCACATTGGAACAAGACAGTGTGACACCAACCAATGGATGGAAGGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTACTTGGATTATCCGAGTCTGTGCCGGCTTTCGATGACCAATTCGTTAATGCGGAAGGCTGCGAATGATGATAATGCATGGAAAGCGCTATATCACAAGgtgatttctttgttctttgccatgcatgtttgtattttgaacttatttatgtttgtttctgttgaatttcgagtttcttgtggttttattcaactaattt
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