Sequence
atgc intronic sequence ATGC exonic sequence...tgatgaattttcccggaaatcgaatgggggatggattttcttgggaatcaaacgggggttgaaaaaaaaaaaaacaataataacatgattagattggtacCTGCGAGGATTAAGAGACGCAGAGAAAACTAGGGCGAATTCTGTCATCTGGATAGCAACTTCAGAAAAGAGCTTCTTGATGCCCAAGGACC
Basic information
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatcaaacgggggttgaaaaaaaaaaaaacaataataacatgattagattggtacCTGCGAGGATTAAGAGACGCAGAGAAAACTAGGGCGAATTCTGTCATCTGGATAGCAACTTCAGAAAAGAGCTTCTTGATGCCCAAGGACC
taataac putative branch site (score: 1)
ttgaaaaaaaaaaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgatgaattttcccggaaatcgaatgggggatggattttcttgggaatcaaacgggggttgaaaaaaaaaaaaacaataataacatgattagattggtacCTGCGAGGATTAAGAGACGCAGAGAAAACTAGGGCGAATTCTGTCATCTGGATAGCAACTTCAGAAAAGAGCTTCTTGATGCCCAAGGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - ggaaatc
- - - - - - - - - - - - - -gggatgg
- - - - - - - - - - - - - - - - - - -ttcttgg
- - - - - - - - - - - - - - - - - - - - - - -aatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -gggggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaca