1 5' 3' | 2 5' 3' | 3 5' 3' |
GTTGGTGTGGAGAAATACGTGATGTTATCTTCTCTGACAATGGAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAGgtgtggcttttcttttatgtagtgtggtctttcctatctaaatgtttttttttgcatttgcccatggtttagccaaattgaagacatttaaatttcacaa...
species | Vitis vinifera |
transcript | Vv01s0150g00610.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAG GCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTANATEST: gi|27755329|gb|CB036084.1|CB036084
genomic: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAGgtgtggcttt ... tttgatgcagGCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGAT
EST: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAG GCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGATEST: gi|83274626|gb|DV938723.1|DV938723
genomic: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAGgtgtggcttt ... tttgatgcagGCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGAT
EST: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAG GCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGATEST: gi|30127142|gb|CB912481.1|CB912481
genomic: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAGgtgtggcttt ... tttgatgcagGCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGAT
EST: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAG GCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGATEST: gi|27755332|gb|CB036087.1|CB036087
genomic: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAGgtgtggcttt ... tttgatgcagGCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGAT
EST: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAG GCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGATEST: gi|351021519|gb|FQ446063.1|FQ446063
genomic: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAGgtgtggcttt ... tttgatgcagGCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGAT
EST: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAG GCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGATEST: gi|27755334|gb|CB036089.1|CB036089
genomic: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAGgtgtggcttt ... tttgatgcagGCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGAT
EST: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAG GCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGATEST: gi|71872275|gb|DT021330.1|DT021330
genomic: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAGgtgtggcttt ... tttgatgcagGCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGAT
EST: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAG GCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGATEST: gi|110380501|gb|EC945772.1|EC945772
genomic: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAGgtgtggcttt ... tttgatgcagGCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGAT
EST: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAG GCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGATEST: gi|32460606|gb|CD801780.1|CD801780
genomic: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAGgtgtggcttt ... tttgatgcagGCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGAT
EST: TGACTGTGGTATATCGTGTTACAGTGTACGAGGTTCTGATGGAGAG GCACACCGTGAATCAACCGGAACAGTATTACCAACTGATGGACATGTAGATEST: gi|110396020|gb|EC961694.1|EC961694
genomic: TGACTGTGGTATATCGTGTTACA--GTACGAGGTTCTGATGGAGAGgtgtggcttt ... tttgatgcagGCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGAT
EST: ACAGTACGAGGTTCTGATGGAGAG GCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGATEST: gi|110697819|gb|EE075231.1|EE075231
genomic: ACAGTACGAGGTTCTGATGGAGAGgtgtggcttt ... tttgatgcagGCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGAT
EST: CGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAG GCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGATEST: gi|110382421|gb|EC939438.1|EC939438
genomic: CGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAGgtgtggcttt ... tttgatgcagGCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGAT
EST: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAG GCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGATEST: gi|110700959|gb|EE078071.1|EE078071
genomic: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAGgtgtggcttt ... tttgatgcagGCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGAT
EST: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAG GCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAAATEST: gi|110400063|gb|EC966605.1|EC966605
genomic: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAGgtgtggcttt ... tttgatgcagGCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGAT
EST: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAG GCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGATEST: gi|110387237|gb|EC951891.1|EC951891
genomic: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAGgtgtggcttt ... tttgatgcagGCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGAT
EST: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTTTGATGGAGAG GCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGATEST: gi|110397145|gb|EC962868.1|EC962868
genomic: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAGgtgtggcttt ... tttgatgcagGCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGAT
EST: TCTGATGGAGAG GCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGATEST: gi|110409583|gb|EC975249.1|EC975249
genomic: TCTGATGGAGAGgtgtggcttt ... tttgatgcagGCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGAT
EST: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAG GCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGATEST: gi|351026810|gb|FQ436463.1|FQ436463
genomic: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAGgtgtggcttt ... tttgatgcagGCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGAT
EST: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAG GCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGATEST: gi|110383667|gb|EC948050.1|EC948050
genomic: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAGgtgtggcttt ... tttgatgcagGCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGAT
EST: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAG GCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGATEST: gi|32461216|gb|CD802390.1|CD802390
genomic: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAGgtgtggcttt ... tttgatgcagGCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGAT
EST: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAG GCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGATEST: gi|34362920|gb|CF404505.1|CF404505
genomic: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAGgtgtggcttt ... tttgatgcagGCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGAT
EST: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAG GCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGATEST: gi|110715660|gb|EE093965.1|EE093965
genomic: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAGgtgtggcttt ... tttgatgcagGCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGAT
EST: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAG GCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGATEST: gi|110398620|gb|EC965089.1|EC965089
genomic: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAGgtgtggcttt ... tttgatgcagGCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGAT
EST: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAG GCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGATEST: gi|34319852|gb|CF372606.1|CF372606
genomic: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAGgtgtggcttt ... tttgatgcagGCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGAT
EST: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAG GCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGATEST: gi|349820141|gb|FQ404863.1|FQ404863
genomic: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAGgtgtggcttt ... tttgatgcagGCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGAT
EST: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAG GCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGATEST: gi|351024248|gb|FQ423671.1|FQ423671
genomic: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAGgtgtggcttt ... tttgatgcagGCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGAT
EST: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAG GCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGATEST: gi|110365672|gb|EC929043.1|EC929043
genomic: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAGgtgtggcttt ... tttgatgcagGCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGAT
EST: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAG GCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGATEST: gi|110374352|gb|EC939041.1|EC939041
genomic: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAGgtgtggcttt ... tttgatgcagGCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGAT
EST: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAG GCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGATEST: gi|46910258|gb|CN545633.1|CN545633
genomic: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAGgtgtggcttt ... tttgatgcagGCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGAT
EST: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTTTGATGGAGAG GCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGATEST: gi|349828318|gb|FQ416271.1|FQ416271
genomic: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAGgtgtggcttt ... tttgatgcagGCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGAT
EST: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAG GCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGATEST: gi|110366297|gb|EC930122.1|EC930122
genomic: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAGgtgtggcttt ... tttgatgcagGCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGAT
EST: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAG GCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGATEST: gi|32458145|gb|CD799319.1|CD799319
genomic: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAGgtgtggcttt ... tttgatgcagGCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGAT
EST: AAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGATTCTGATGGAGAG GCTCACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGATEST: gi|349821699|gb|FQ413015.1|FQ413015
genomic: -AAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAGgtgtggcttt ... tttgatgcagGCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGAT
EST: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAG GCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGAT
genomic: GAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAGgtgtggcttt ... tttgatgcagGCACACCGTGAATCAACTGGAACAGTATTACCAACTGATGGACATGTAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGGTGTGGAGAAATACGTGATGTTATCTTCTCTGACAATGGAAGCGTGACTGTGGTATATCGTGTTACAGTACGAGGTTCTGATGGAGAGgtgtggcttttcttttatgtagtgtggtctttcctatctaaatgtttttttttgcatttgcccatggtttagccaaattgaagacatttaaatttcacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattga