Sequence
atgc intronic sequence ATGC exonic sequence...tttctcagcaatggattcgacccctcttctggtttgctagagaccccatcccatcccatcccatctcattcctgttgtgatttcctgatatcaactttagGGAAAGAGGGTTATCATTACTTACTGGAGCTGCAAATCATAAGTGGACAAATCAGATCAGGTCATGATATCCCAGTATGTGGGTCTGATTTGGTTGGGGG
Basic information
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccatcccatcccatcccatctcattcctgttgtgatttcctgatatcaactttagGGAAAGAGGGTTATCATTACTTACTGGAGCTGCAAATCATAAGTGGACAAATCAGATCAGGTCATGATATCCCAGTATGTGGGTCTGATTTGGTTGGGGG
tcctgat putative branch site (score: 3)
atatcaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttctcagcaatggattcgacccctcttctggtttgctagagaccccatcccatcccatcccatctcattcctgttgtgatttcctgatatcaactttagGGAAAGAGGGTTATCATTACTTACTGGAGCTGCAAATCATAAGTGGACAAATCAGATCAGGTCATGATATCCCAGTATGTGGGTCTGATTTGGTTGGGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - tcagcaa
- - - - - - - - - - -ccctctt
- - - - - - - - - - - - - - -tggtttg
- - - - - - - - - - - - - - - - - - - - - -ccccatc
- - - - - - - - - - - - - - - - - - - - - - -ccatccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcctga