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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGACTCAATCAAAAAACTTGGTCGCTGAGAGGAGGCGAAGGAAGAAGCTTAATGATAGACTCTATGCGCTTCGTGCTTTGGTTCCCAAAATATCTAAGgtggctgtcattcttctttggcctggtcaagattcttcaagattaattcacactatgattagtactttttactgatatctgatgtatttttgattcctag

Basic information

species Vitis vinifera
transcript Vv01s0127g00860.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0127g00860.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ13392 (Selaginella moellendorffii), 5'ss of exon 6
-AGGGACTCAATCAAAAAACTTGGTCGCTGAGAGGAGGCGAAGGAAGAAGCTTAATGATAGACTCTATGCGCTTCGTGCTTTGGTTCCCAAAATATCTAAGgtggctgtcattcttctttggcctggtcaagattcttcaagattaattcacactatgattagtactttttactgatatctgatgtatttttgattcctag
  || |||   || || ||||||||||| ||||||| ||| |||||||||||||| ||  | |||||  | || || || ||||| || || ||| | |||||  |    |||      || |    | |  | |      || | | | |||   || ||  | || | |    | |                       
GCGGCACTTG-TCCAAGAACTTGGTCGCCGAGAGGAAGCGGAGGAAGAAGCTTAACGAGCGCCTCTACTCTCTCCGAGCATTGGTCCCAAAGATAACCAAGgtaacg---atttgagactgac---attataaatgaaggtgaatgactgacagggtggtt--tcctgtgtctcaacag----------------------

upper sequence: Vv01s0127g00860.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ06925 (Selaginella moellendorffii), 5'ss of exon 6
-AGGGACTCAATCAAAAAACTTGGTCGCTGAGAGGAGGCGAAGGAAGAAGCTTAATGATAGACTCTATGCGCTTCGTGCTTTGGTTCCCAAAATATCTAAGgtggctgtcattcttctttggcctggtcaagattcttcaagattaattcacactatgattagtactttttactgatatctgatgtatttttgattcctag
  || |||   || || ||||||||||| ||||||| ||| |||||||||||||| ||  | |||||  | || || || ||||| || || ||| | |||||  |    |||      || |    | |  | |    | || | | | |||   || ||  | || | |    | |                       
GCGGCACTTG-TCCAAGAACTTGGTCGCCGAGAGGAAGCGGAGGAAGAAGCTTAACGAGCGCCTCTACTCTCTCCGAGCATTGGTCCCAAAGATAACCAAGgtaacg---atttgagactgac---attataaatggagatgaatgactgacagggtggtt--tcctgtgtctcaacag----------------------