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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGAAAGTTCTTGGAGCTTAGCTTTTCAAACCATGCAACTGCTAATCGTGTTGCAACTTGTGGTCATTCTTTACAAAGGGACTGCCTCCGTTTCTATGGgtatatgccattaaatttgtaattcgatgtcaattttctaattgttgggtgtgattatgatgattgttggaagctttcatttttcttacag

Basic information

species Vitis vinifera
transcript Vv01s0011g04790.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g04790.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os08g33200.1 (Oryza sativa), 5'ss of exon 6
TTGGAAAGTTCTTGGAGCTTAGCTTTTCAAACCATGCAACTGCTAATCGTGTTGCAACTTGTGGTCATTCTTTACAAAGGGACTGCCTCCGTTTCTATGGgtatatgcc-attaaatttgtaattcgatgtcaattttctaattgttgggtgtgattatgatgattgttggaagctttcatttttcttacag
|||| |||||||||||||| ||||||||||||||| | |||||||| || ||||||| |||||| |||||| | || || |||||||| ||||||||||||||| |  |   |  ||   | |     |  || |  || |||  ||   |||||||   ||   | |   ||   | ||            
TTGGGAAGTTCTTGGAGCTAAGCTTTTCAAACCATACTACTGCTAACCGAGTTGCAAGTTGTGGACATTCTCTCCAGAGAGACTGCCTTCGTTTCTATGGgtatgtatctgctgtatccttcaccaattaacattgctc-aatccttcaatgtgatttcaatttatctgctaaatatccag-----------

upper sequence: Vv01s0011g04790.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os09g23740.1 (Oryza sativa), 5'ss of exon 5
TTGGAAAGTTCTTGGAGCTTAGCTTTTCAAACCATGCAACTGCTAATCGTGTTGCAACTTGTGGTCATTCTTTACAAAGGGACTGCCTCCGTTTCTATGGgtatatgcc---attaaattt--gtaattcgatgtca--attttctaattgttgggtgtgattatgatgattgttgga--agctttcatttttcttacag
|||| || ||| | ||||| |||||||| || ||||| ||||| || ||  |||| | ||||||||| ||| | || ||||||||||| ||||||||||||||| |  |    |||  ||    | || |  |||    | ||||| | | |    |   |   | ||| ||  ||       || | |   | || |||
TTGGGAAATTCCTAGAGCTCAGCTTTTCGAATCATGCGACTGCCAACCGACTTGCCAGTTGTGGTCACTCTCTCCAGAGGGACTGCCTTCGTTTCTATGGgtatgtagcttgtttacgttcccatcatcccgtgttctcagtttctcactatccaatactacagtaatgtttaatgtttcgatttgcttcaatattgcag

upper sequence: Vv01s0011g04790.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA20G01680.1 (Glycine max), 5'ss of exon 10
TTGGAAAGTTCTTGGAGCTTAGCTTTTCAAACCATGCAACTGCTAATCGTGTTGCAACTTGTGGTCATTCTTTACAAAGGGACTGCCTCCGTTTCTATGGgtatat------gccattaaatttgtaattcgatgtcaattttctaatt---gttgggtgtgattatgatgattgttggaagctttcatttttcttacag
|||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||| || ||||| |||||||||||||||||||| ||      | ||   |||    |||    | |   || | |||||   ||||| | | | ||     |  ||   || |   | | | | | ||||
TTGGAAAGTTCTTGGAACTTAGCTTTTCAAACCATGCAACTGCAAATCGAGTTGCAACCTGTGGACATTCTTTGCAGAGGGATTGCCTCCGTTTCTATGGgtaaatcatccagacaaggaatcaccaatcaattttttgttatgtaatttgtgttggttatcaatacttgaaaggtaacaaacaaccttatgtgtaacag

upper sequence: Vv01s0011g04790.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA07G34030.2 (Glycine max), 5'ss of exon 7
TTGGAAAGTTCTTGGAGCTTAGCTTTTCAAACCATGCAACTGCTAATCGTGTTGCAACTTGTGGTCATTCTTTACAAAGGGACTGCCTCCGTTTCTATGGgtatatgccattaaatttgtaattcgatgtcaattttctaat-tgttgggtgtgattatgat-gattgttggaagctttcatttttcttacag--------
|||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||| ||||| |||||||| || ||||| ||||||||||| |||||||| || |    | |   | |||      |||||||| |  | |||    |||| |  | ||  ||  ||| ||| |  ||     | |   |        
TTGGAAAGTTCTTGGAACTTAGCTTTTCTAACCATGCAACTGCAAATCGAGTTGCAACCTGTGGACATTCTTTGCAGAGGGATTGCCTCCGTTTTTATGGgtaaat-catccagacaaggaatcaccaatcaattttttgttatgtaatttgtgttggtcatcaatacttgaaaggtgacaaacaacctgatgtgtaacag

upper sequence: Vv01s0011g04790.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT1G71010.1 (Arabidopsis thaliana), 5'ss of exon 6
TTGGAAAGTTCTTGGAGCTTAGCTTTTCAAACCATGCAACTGCTAATCGTGTTGCAACTTGTGGTCATTCTTTACAAAGGGACTGCCTCCGTTTCTATGGgtatatgccattaaatttgtaattcgatgtcaattttctaattgt-tgggtgtgattatgatgattgttggaagctttcatttttcttacag
||||||||||  |||| ||||||||||| || ||||||||||| |||||||||||| |||| ||||||||  | ||||| |||||||| || ||||||||||| | ||       | | ||||   ||     | ||  | || | |   ||   |||   | ||  |       | | |||| | ||  ||
TTGGAAAGTTTCTGGAACTTAGCTTTTCGAATCATGCAACTGCGAATCGTGTTGCATCTTGCGGTCATTCGCTTCAAAGAGACTGCCTTCGATTCTATGGgtaaacgcaggc---tgtataatatcattc---tcttacagttatctcaatgctgttacactaataat-----attatgatttgttttgtag