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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGCTGTGTACACCGCCTCAGGAGGAAAAAAAATAAACATAATAAGTCATTCTATGGGGGGTCTACTTGTGAAATGTTTCATGAGTTTACACACTGATgtaaggaatccatattctttacttctttcttttatttgttattttctttccatttcaggagttttgtttgagcagttcatgtctttgtaaattgttgcttcgtctagatgctgtatgaagtcaatagttttatgttaatgttatttgttttgcag

Basic information

species Vitis vinifera
transcript Vv01s0011g01830.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g01830.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G02570.1 (Glycine max), 5'ss of exon 4
GGAGGCTGTGTACACCGCCTCAGGAGGAAAAAAAATAAACATAATAAGTCATTCTATGGGGGGTCTACTTGTGAAATGTTTCATGAGTTTACACACTGATgtaaggaatc-catattctttacttctttctttt-atttgttattttctttccatttcagg-agttttgt---ttgagcagttcatgtctttgtaaattgttgcttcg--tctagatgctgtatgaagtcaatagttttatgttaatgttatttgttttgcag
 ||  |  | || |  ||  ||||||| || ||||||||||| |||| |||||||||||| |||||  | ||||||||||||||| |  | || |  |||||||   ||| ||||  |||  | | |   |||| || | || | |  ||||||||| |   | |  | |   ||   || || |||  ||    | |||   ||| |  | ||  |||||  || |    ||   || || ||  | | || | |||| |||
AGAATCAATTTATAATGCTGCAGGAGGGAAGAAAATAAACATTATAACTCATTCTATGGGCGGTCTTTTGGTGAAATGTTTCATGTGCCTGCAAAGCGATgtaacacatctcataagcttctcatatcagttttgatctattttgtagtttccatttaatctaatcatatatatttgtcaatttatgatttatacacttgagtcttggaatttatctgctgc-tgtaac--atgtgttcatttttgt-tcatgtctttttcag