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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGTATGGAGAATCAATGGGAGGAGCAATAGCTCTGAATATGGATAGACAAACACCAGATTATTGGGATGGCGCAGTCTTGGTTGCACCCATGTGCAAGgtatgtttctattcccgtgttttcatacaacaaacgtaaatattcctaagaatttttttttctatgtaaaaag

Basic information

species Vitis vinifera
transcript Vv00s0317g00110.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0317g00110.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G38470.1 (Glycine max), 5'ss of exon 4
TCTGTATGGAGAATCAATGGGAGGAGCAATAGCTCTGAATATGGATAGACAAACACCAGATTATTGGGATGGCGCAGTCTTGGTTGCACCCATGTGCAAGgtatgtttctattcccgtgttttcatacaacaaacgtaaatattcctaagaatttttttttctatgtaaaaag---------------------------
  ||   || ||||| |||||||||||  | |||||   | || | ||  |||  ||| | || |||||||| ||| | |||||||||||||||||||||||    |||  ||| |   || |  |    |  |    |  |    ||| |    |  ||  || || | |                             
CTTGATGGGGGAATCCATGGGAGGAGCTGTGGCTCTACTTTTGCACAGGAAAAAGCCACAATACTGGGATGGGGCAATTTTGGTTGCACCCATGTGCAAGgttccattcctttctccaattatttttgttctcattctatcaaatttaacacacgtgcttcatacgttacacactcttctttttattgctatatatttat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110726784|gb|EE102868.1|EE102868
EST:     AAACACCAGATTATTGGGATGGCGCAGTCTTGGTTGCACCCATGTGCAAG                         ATTGCAGATGATATGAAGCCAAATCCAGTGGTGATCACTGTTCTAACCATG
genomic: AAACACCAGATTATTGGGATGGCGCAGTCTTGGTTGCACCCATGTGCAAGgtatgtttct ... atgtaaaaagATTGCAGATGATATGAAGCCAAATCCAGTGGTGATCACTGTTCTAACCATG
EST: gi|110699813|gb|EE077156.1|EE077156
EST:     AAACACCAGATTATTGGGATGGCGCAGTCTTGGTTGCACCCATGTGCAAG                         ATTGCAGATGATATGAAGCCAAATCCAGTGGTGATCACTGTTCTAACCATG
genomic: AAACACCAGATTATTGGGATGGCGCAGTCTTGGTTGCACCCATGTGCAAGgtatgtttct ... atgtaaaaagATTGCAGATGATATGAAGCCAAATCCAGTGGTGATCACTGTTCTAACCATG
EST: gi|110364256|gb|EC923698.1|EC923698
EST:     AAACACCAGATTATTGGGATGGCGCAGTCTTGGTTGCACCCATGTGCAAG                         ATTGCAGATGATATGAAGCCAAATCCAGTGGTGATCACTGTTCTAACCATG
genomic: AAACACCAGATTATTGGGATGGCGCAGTCTTGGTTGCACCCATGTGCAAGgtatgtttct ... atgtaaaaagATTGCAGATGATATGAAGCCAAATCCAGTGGTGATCACTGTTCTAACCATG
EST: gi|33403801|gb|CF209428.1|CF209428
EST:     AAACACCAGATTATTGGGATGGCGCAGTCTTGGTTGCACCCATGTGCAAG                         ATTGCAGATGATATGAAGCCAAATCCAGTGGTGATCACTGTTCTAACCATG
genomic: AAACACCAGATTATTGGGATGGCGCAGTCTTGGTTGCACCCATGTGCAAGgtatgtttct ... atgtaaaaagATTGCAGATGATATGAAGCCAAATCCAGTGGTGATCACTGTTCTAACCATG
EST: gi|110389675|gb|EC954532.1|EC954532
EST:     AAACACCAGATTATTGGGATGGCGCAGTCTTGGTTGCACCCATGTGCAAG                         ATTGCAGATGATATGAAGCCAAATCCAGTGGTGATCACTGTTCTAACCATG
genomic: AAACACCAGATTATTGGGATGGCGCAGTCTTGGTTGCACCCATGTGCAAGgtatgtttct ... atgtaaaaagATTGCAGATGATATGAAGCCAAATCCAGTGGTGATCACTGTTCTAACCATG
EST: gi|110383188|gb|EC947544.1|EC947544
EST:     AAACACCAGATTATTGGGATGGCGCAGTCTTGGTTGCACCCATGTGCAAG                         ATTGCAGATGATATGAAGCCAAATCCAGTGGTGATCACTGTTCTAACCATG
genomic: AAACACCAGATTATTGGGATGGCGCAGTCTTGGTTGCACCCATGTGCAAGgtatgtttct ... atgtaaaaagATTGCAGATGATATGAAGCCAAATCCAGTGGTGATCACTGTTCTAACCATG
EST: gi|110381666|gb|EC935070.1|EC935070
EST:     AAACACCAGATTATTGGGATGGCGCAGTCTTGGTTGCACCCATGTGCAAG                         ATTGCAGATGATATGAAGCCAAATCCAGTGGTGATCACTGTTCTAACCATG
genomic: AAACACCAGATTATTGGGATGGCGCAGTCTTGGTTGCACCCATGTGCAAGgtatgtttct ... atgtaaaaagATTGCAGATGATATGAAGCCAAATCCAGTGGTGATCACTGTTCTAACCATG
EST: gi|110728892|gb|EE104860.1|EE104860
EST:     AAACACCAGATTATTGGGATGGCGCAGTCTTGGTTGCACCCATGTGCAAG                         ATTGCAGATGATATGAAGCCAAATCCAGTGGTGATCACTGTTCTAACCATG
genomic: AAACACCAGATTATTGGGATGGCGCAGTCTTGGTTGCACCCATGTGCAAGgtatgtttct ... atgtaaaaagATTGCAGATGATATGAAGCCAAATCCAGTGGTGATCACTGTTCTAACCATG
EST: gi|110699143|gb|EE075883.1|EE075883
EST:     AAACACCAGATTATTGGGATGGCGCAGTCTTGGTTGCACCCATGTGCAAG                         ATTGCAGATGATATGAAGCCAAATCCAGTGGTGATCACTGTTCTAACCATG
genomic: AAACACCAGATTATTGGGATGGCGCAGTCTTGGTTGCACCCATGTGCAAGgtatgtttct ... atgtaaaaagATTGCAGATGATATGAAGCCAAATCCAGTGGTGATCACTGTTCTAACCATG
EST: gi|33403793|gb|CF209420.1|CF209420
EST:     AAACACCAGATTATTGGGATGGCGCAGTCTTGGTTGCACCCATGTGCAAG                         ATTGCAGATGATATGAAGCCAAATCCA
genomic: AAACACCAGATTATTGGGATGGCGCAGTCTTGGTTGCACCCATGTGCAAGgtatgtttct ... atgtaaaaagATTGCAGATGATATGAAGCCAAATCCA