Sequence
atgc intronic sequence ATGC exonic sequence...ccatgaaatgcatcgctgagaatccttggtgctacgatcgacttcaacaaggtttttacgatcatcctctatgatctaactctcaaagtttcatgaccagAGCATCTTGCCATAGCTGCTGCGAAGGATTCGAGCGAGCCGCTCCGTGTAGAAGACCTCCAAAGGATGAACTACACCTGGAAAGTTGTCCAGGAAGCCAT
Basic information
species | Selaginella moellendorffii |
transcript | EFJ38814 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|169022788|gb|FE430192.1|FE430192EST: ATGAAATGCATCGCTGAGAATCCTTGGTGCTACGATCGACTTCA-ACAAG AGCATCTTGCCATAGCTGCTGCGAAGGATTCGAGCGAGCCGCTCCGTGTA
genomic: ATAAAATGCATCGCTGAGAATCCTTGGTGTTACGATCGACTT-AGACAAGgttttcacga ... tcatgaccagAGCATCTTGCCATAGCTGCTGCGAAGGATTCGAGCGAGCCGCTCCGTGTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacaaggtttttacgatcatcctctatgatctaactctcaaagtttcatgaccagAGCATCTTGCCATAGCTGCTGCGAAGGATTCGAGCGAGCCGCTCCGTGTAGAAGACCTCCAAAGGATGAACTACACCTGGAAAGTTGTCCAGGAAGCCAT
atctaac putative branch site (score: 2)
ttttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ccatgaaatgcatcgctgagaatccttggtgctacgatcgacttcaacaaggtttttacgatcatcctctatgatctaactctcaaagtttcatgaccagAGCATCTTGCCATAGCTGCTGCGAAGGATTCGAGCGAGCCGCTCCGTGTAGAAGACCTCCAAAGGATGAACTACACCTGGAAAGTTGTCCAGGAAGCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - -atccttg
- - - - - - - - - - - - - - - - - - -tcgactt
- - - - - - - - - - - - - - - - - - - - - - - - - - tttttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctcaa