1 5' 3' |
...ggaacataaaccagtagcaacataaacggaaaggcgagagaatttcttaaacccaaaggttctacatgcttacgttgctactggttcgttgtctcgtcagGTTCCACCCCTTATCAGAGTTTGACGACACGAAAAGAAGCTGTAGAAAGCGACTCGCCGACCATAACCGTCGGCGGCGAAAG
species | Selaginella moellendorffii |
transcript | EFJ38765 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
cttaaacccaaaggttctacatgcttacgttgctactggttcgttgtctcgtcagGTTCCACCCCTTATCAGAGTTTGACGACACGAAAAGAAGCTGTAGAAAGCGACTCGCCGACCATAACCGTCGGCGGCGAAAG
tgcttac putative branch site (score: 7)
ttgtctc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaacataaaccagtagcaacataaacggaaaggcgagagaatttcttaaacccaaaggttctacatgcttacgttgctactggttcgttgtctcgtcagGTTCCACCCCTTATCAGAGTTTGACGACACGAAAAGAAGCTGTAGAAAGCGACTCGCCGACCATAACCGTCGGCGGCGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- aacataaa
- - - - - - - -agcaaca
- - - - - - - - - - - - aacggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttctac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgctac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttcgtt