Sequence
atgc intronic sequence ATGC exonic sequencegtagtacaggtttaccatttatttccatgtggctggctcgtcgggacgggcactcattccccaaagctcgtttcatttcctttctagATTTCAGGCAAGACGGTCGGAGAGGTGAAAGTCGTATCCGACATGCACCAGAGGAAAGCCGAGATGGCACGGCAGGCGGAGGCCTTTATCGCACTTCCGG
Basic information
species | Selaginella moellendorffii |
transcript | EFJ38723 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EFJ38723 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: GRMZM2G021406_T01 (Zea mays), 3'ss of exon 3
----gtagtacaggtttaccatttatttccatg--tggctgg-ctcgtcggg-----acgggcactcattccccaaagct-cgtttcatttcctttctagATTTCAGGCAAGACGGTCGGAGAGGTGAAAGTCGTATCCGACATGCACCAGAGGAAAGCCGAGATGGCACGGCAGGCGGAGGCCTTTATCGCACTTCCGG
| | | ||| | | || | || | | | ||| ||| | || ||| || | | || || ||| ||| | | |||| ||||| | | || |||||||||| ||||| |||||||||||||||||||||||||||||| || ||| | | ||||| ||||| || || |
gacagaaatgcagatctcacagtaatgtatacgcttggttggacacgacggagatttacagtggcattttttacacggctgtcttttacgcttgtggcagATATCAGGTGAAAGCGTGGGAGAGGTGAGGGTCGTGGACGACATGCACCAGAGGAAAGCCGAGATGGCTCGTCAGTCCCAAGCCTTCATCGCTCTCCCAG
upper sequence: EFJ38723 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: GRMZM2G008726_T01 (Zea mays), 3'ss of exon 3
gtagtacaggtttaccatttatttccatgtg--gctggctcgt----cgggacgggc-------actcattccc---caaagctcgtttcatttcctttctagATTTCAGGCAAGACGGTCGGAGAGGTGAAAGTCGTATCCGACATGCACCAGAGGAAAGCCGAGATGGCACGGCAGGCGGAGGCCTTTATCGCACTTCCGG
| ||| | || ||| | ||||| || | | | || | || |||| | |||| | | | || | |||||| || || | || ||||| || || || || |||||||||||| |||||||||| |||||||||||||| || || ||||| || || ||||| |
--accacaa-tctaaaattcgctcccatggaaagcaaatccatgacctgagaagtgctatatcaactcggctacaaacaaattttttcttcttctcaaactagATATCTGGTGCTAGCGTTGGAGAAGTTAAGGTTGTCTCCGACATGCACGAGAGGAAAGCTGAGATGGCACGGCAAGCTGATGCCTTCATAGCTCTTCCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctggctcgtcgggacgggcactcattccccaaagctcgtttcatttcctttctagATTTCAGGCAAGACGGTCGGAGAGGTGAAAGTCGTATCCGACATGCACCAGAGGAAAGCCGAGATGGCACGGCAGGCGGAGGCCTTTATCGCACTTCCGG
ctcgtttcatttcctt CT-rich tract
tttcattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagtacaggtttaccatttatttccatgtggctggctcgtcgggacgggcactcattccccaaagctcgtttcatttcctttctagATTTCAGGCAAGACGGTCGGAGAGGTGAAAGTCGTATCCGACATGCACCAGAGGAAAGCCGAGATGGCACGGCAGGCGGAGGCCTTTATCGCACTTCCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG