1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagccttcttggcctttgaggtgcattttaacatttttgctcggcagGATCCAGAACAATATACGTCGGAAGGGCGCAGAAGAAGGCGGAACGTGAGCAGATACTTCGCCGACAATTCGAAGAGAAACGGATGGAACAGTTCCAGAA
species | Selaginella moellendorffii |
transcript | EFJ38579 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCCGGAGGCTGCAAGGGCAGCGGTTGAAACGATGAACAACAGCCAACTTG GATCCAGAACAATATACGTCGGAAGGGCGCAGAAGAAGGCGGAACGTGAGCEST: gi|169036917|gb|FE446035.1|FE446035
genomic: TCCGGAGGCTGCAAGGGCAGCGGTTGAAACGATGAACAATAGCCAACTTGgtaagccttc ... tgctcggcagGATCCAGAACAATATACGTCGGAAGGGCGCAGAAGAAGGCGGAACGTGAGC
EST: CCCGGAGGCTGCAAGGGCAGCGGTTGAAACGATGAACAACAGCCAACTTG GATCCAGAACAATATACGTCGGAAGGGCGCAGAAGAAGGCGGAACGTGAGCEST: gi|169047279|gb|FE456528.1|FE456528
genomic: TCCGGAGGCTGCAAGGGCAGCGGTTGAAACGATGAACAATAGCCAACTTGgtaagccttc ... tgctcggcagGATCCAGAACAATATACGTCGGAAGGGCGCAGAAGAAGGCGGAACGTGAGC
EST: CCCGGAGGCTGCAAGGGCAGCGGTTGAAACGATGAACAACAGCCAACTTG GATCCAGAACAATATACGTCGGAAGGGCGCAGAAGAAGGCGGAACGTGAGCEST: gi|169024783|gb|FE435475.1|FE435475
genomic: TCCGGAGGCTGCAAGGGCAGCGGTTGAAACGATGAACAATAGCCAACTTGgtaagccttc ... tgctcggcagGATCCAGAACAATATACGTCGGAAGGGCGCAGAAGAAGGCGGAACGTGAGC
EST: CCCGGAGGCTGCAAGGGCAGCGGTTGAAACGATGAACAACAGCCAACTTG GATCCAGAACAATATACGTCGGAAGGGCGCAGAAGAAGGCGGAACGTGAGCEST: gi|169020196|gb|FE428245.1|FE428245
genomic: TCCGGAGGCTGCAAGGGCAGCGGTTGAAACGATGAACAATAGCCAACTTGgtaagccttc ... tgctcggcagGATCCAGAACAATATACGTCGGAAGGGCGCAGAAGAAGGCGGAACGTGAGC
EST: CCCGGAGGCTGCAAGGGCAGCGGTTGAAACGATGAACAACAGCCAACTTG GATCCAGAACAATATACGTCGGAAGGGCGCAGAAGAAGGCGGAACGTGAGCEST: gi|169079669|gb|FE486333.1|FE486333
genomic: TCCGGAGGCTGCAAGGGCAGCGGTTGAAACGATGAACAATAGCCAACTTGgtaagccttc ... tgctcggcagGATCCAGAACAATATACGTCGGAAGGGCGCAGAAGAAGGCGGAACGTGAGC
EST: CCCGGAGGCTGCAAGGGCAGCGGTTGAAACGATGAACAACAGCCAACTTG GATCCAGAACAATATACGTCGGAAGGGCGCAGAAGAAGGCGGAACGTGAGCEST: gi|169045998|gb|FE453115.1|FE453115
genomic: TCCGGAGGCTGCAAGGGCAGCGGTTGAAACGATGAACAATAGCCAACTTGgtaagccttc ... tgctcggcagGATCCAGAACAATATACGTCGGAAGGGCGCAGAAGAAGGCGGAACGTGAGC
EST: CCCGGAGGCTGCAAGGGCAGCGGTTGAAACGATGAACAACAGCCAACTTG GATCCAGAACAATATACGTCGGAAGGGCGCAGAAGAAGGCGGAACGTGAGCEST: gi|169093873|gb|FE493461.1|FE493461
genomic: TCCGGAGGCTGCAAGGGCAGCGGTTGAAACGATGAACAATAGCCAACTTGgtaagccttc ... tgctcggcagGATCCAGAACAATATACGTCGGAAGGGCGCAGAAGAAGGCGGAACGTGAGC
EST: CCCGGAGGCTGCAAGGGCAGCGGTTGAAACGATGAACAACAGCCAACTTG GATCCAGAACAATATACGTCGGAAGGGCGCAGAAGAAGGCGGAACGTGAGC
genomic: TCCGGAGGCTGCAAGGGCAGCGGTTGAAACGATGAACAATAGCCAACTTGgtaagccttc ... tgctcggcagGATCCAGAACAATATACGTCGGAAGGGCGCAGAAGAAGGCGGAACGTGAGC
gtaagccttcttggcctttgaggtgcattttaacatttttgctcggcagGATCCAGAACAATATACGTCGGAAGGGCGCAGAAGAAGGCGGAACGTGAGCAGATACTTCGCCGACAATTCGAAGAGAAACGGATGGAACAGTTCCAGAA
ttttaac putative branch site (score: 60)
tttttgctc CT-rich tract
attttaacattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagccttcttggcctttgaggtgcattttaacatttttgctcggcagGATCCAGAACAATATACGTCGGAAGGGCGCAGAAGAAGGCGGAACGTGAGCAGATACTTCGCCGACAATTCGAAGAGAAACGGATGGAACAGTTCCAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA