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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttagagattttatttctttcttaatcgcttaaccatttaaaacaacagGCCAAGATCCAAGAGCTAGCTGAGCATGTCCCTAAAGGCCACATACCACGATCCATGACCATCAATATTCGTGGTGAACTGACTCGTCAGGTA

Basic information

species Selaginella moellendorffii
transcript EFJ38524
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ38524 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: Vv07s0005g01430.t01 (Vitis vinifera), 3'ss of exon 6
----------------------------------------gtgagttagagattttatttctttcttaatcgcttaaccatttaaaacaacagGCCAAGATCCAAGAGCTAGCTGAGCATGTCCCTAAAGGCCACATACCACGATCCATGACCATCAATATTCGTGGTGAACTGACTCGTCAGGTA
                                           | ||||       ||    ||  |||    || |     |  ||  |||||||||||| |||||| ||||||| ||||| || |||||||| || ||| |  | |||||  |  || |  | || ||||| ||  |  ||   
gttctttcctcactcaatttccttgtcctaatactgtatccatatttagcaggagcatgatctttctaa--aattgatgtggtttaattacagGCCAAGATTCAAGAGTTAGCTGAACATGTTCCAAAAGGCCATATTCCAAGGACAATGACTGTTCATCTCAGGGGAGAACTCACGAGAAAG---


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgagttagagattttatttctttcttaatcgcttaaccatttaaaacaacagGCCAAGATCCAAGAGCTAGCTGAGCATGTCCCTAAAGGCCACATACCACGATCCATGACCATCAATATTCGTGGTGAACTGACTCGTCAGGTA
                                 gcttaac  putative branch site (score: 3)
             agattttatttctttc  TA-rich tract