Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   		30  
 5'  3'   		31  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttctctgtcattgtgtctgttaataacttacgcttgtccagATATAAGTTCAACCTTTCAGAAGGGGGTAAATATACTCCAAGATTTCCCGCCTTGAATGGTCGAGTTTATGACAATGAATTTGAATCGCAGTTTTATATG

Basic information

species Selaginella moellendorffii
transcript EFJ37972
intron # 20
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169108936|gb|FE509214.1|FE509214
EST:     GAGCGAGACAATTTACCAGATGGACGACAAATACATGGTCTAACACTGAT                         ATATAAGTTCAACCTTTCAGAAGGGGGTAAATATACTCCAAGATTTCCCGC
genomic: GAGCGAGACAATTTACCAGATGGACGACAAATACATGGTCTAACACTGATgtgagttctc ... gcttgtccagATATAAGTTCAACCTTTCAGAAGGGGGTAAATATACTCCAAGATTTCCCGC
EST: gi|169025995|gb|FE435283.1|FE435283
EST:     CAGATGGACGACAAATACATGGTCTAACACTGAT                         ATATAAGGTCAACCTTTCAGAAGGGGGTAAATATACTCCAAGATTTCCCGC
genomic: CAGATGGACGACAAATACATGGTCTAACACTGATgtgagttctc ... gcttgtccagATATAAGTTCAACCTTTCAGAAGGGGGTAAATATACTCCAAGATTTCCCGC
EST: gi|169023485|gb|FE430083.1|FE430083
EST:     GAGCGAGACAATTTACCAGATGGACGACAAATACATGGTCTAACACTGAT                         ATATAAGTTCAACCTTTCAGAAGGGGGTAAATATACTCCAAGATTTCCCGC
genomic: GAGCGAGACAATTTACCAGATGGACGACAAATACATGGTCTAACACTGATgtgagttctc ... gcttgtccagATATAAGTTCAACCTTTCAGAAGGGGGTAAATATACTCCAAGATTTCCCGC
EST: gi|169105059|gb|FE505914.1|FE505914
EST:     GAGCGAGACAATTTACCAGATGGACGACAAATACATGGTCTAACACTGAT                         ATATAAGGTCAACCTTTCAGAAGGGGGTAAATATACTCCAAGATTTCCCGC
genomic: GAGCGAGACAATTTACCAGATGGACGACAAATACATGGTCTAACACTGATgtgagttctc ... gcttgtccagATATAAGTTCAACCTTTCAGAAGGGGGTAAATATACTCCAAGATTTCCCGC
EST: gi|169036958|gb|FE443866.1|FE443866
EST:     GAGCGAGACAATTTACCAGATGGACGACAAATACATGGTCTAACACTGAT                         ATATAAGGTCAACCTTTCAGAAGGGGGTAAATATACTCCAAGATTTCCCGC
genomic: GAGCGAGACAATTTACCAGATGGACGACAAATACATGGTCTAACACTGATgtgagttctc ... gcttgtccagATATAAGTTCAACCTTTCAGAAGGGGGTAAATATACTCCAAGATTTCCCGC
EST: gi|169094478|gb|FE492402.1|FE492402
EST:     GAGCGAGACAATTTACCAGATGGACGACAAATACATGGTCTAACACTGAT                         ATATAAGTTCAACCTTTCAGAAGGGGGTAAATATACTCCAAGATTTCCCGC
genomic: GAGCGAGACAATTTACCAGATGGACGACAAATACATGGTCTAACACTGATgtgagttctc ... gcttgtccagATATAAGTTCAACCTTTCAGAAGGGGGTAAATATACTCCAAGATTTCCCGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 29 (upstream exon), 29 (downstream exon)
Score: 2

TGCGAACTCCTTACCGGCCCTCCGAATGGAAGTTAGAAGCCTTATCTGCAGAGCGAGACAATTTACCAGATGGACGACAAATACATGGTCTAACACTGATgtgagttctc ... gcttgtccagATATAAGTTCAACCTTTCAGAAGGGGGTAAATATACTCCAAGATTTCCCGCCTTGAATGGTCGAGTTTATGACAATGAATTTGAATCGCAGTTTTATATG




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgagttctctgtcattgtgtctgttaataacttacgcttgtccagATATAAGTTCAACCTTTCAGAAGGGGGTAAATATACTCCAAGATTTCCCGCCTTGAATGGTCGAGTTTATGACAATGAATTTGAATCGCAGTTTTATATG
                                                      cttgtcc  CT-rich tract
                                 ttaataactta  TA-rich tract