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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtacttacgtttttttttcttgttatatgaaaatcttttgcagCTCACAGTTGTTGGTGTACACTCTGCCAAATTCGACAATGAGAAAGACACAGAGGCGATTCGAAATGCAGTGCTTCGGTACAATGTGACGCATCCG

Basic information

species Selaginella moellendorffii
transcript EFJ35596
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ35596 (Selaginella moellendorffii), 3'ss of exon 12
lower sequence: AT1G56500.1 (Arabidopsis thaliana), 3'ss of exon 13
-------------------------------------gtgagtacttacgtttttt---tttcttgttatatgaaaatct-tttgcagCTCACAGTTGTTGGTGTACACTCTGCCAAATTCGACAATGAGAAAGACACAGAGGCGATTCGAAATGCAGTGCTTCGGTACAATGTGACGCATCCG
                                      ||  |  | | |   |||   ||||   |   ||    |||| | ||||| |||| ||||| ||||||||||| || || |||||||||||||||||   ||| || || ||||||||||| ||||| ||  || | |  || |||
gtgagtctttactattgctcctctcttatattttattttggattttcaagcaatttaaatttcacctaggattgccatctgtgtgcagTTCACCGTTGTGGGTGTACACTCGGCTAAGTTCGACAATGAGAAAGATTTAGATGCCATACGAAATGCAGTTCTTCGCTATGATATTAGCCACCCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgagtacttacgtttttttttcttgttatatgaaaatcttttgcagCTCACAGTTGTTGGTGTACACTCTGCCAAATTCGACAATGAGAAAGACACAGAGGCGATTCGAAATGCAGTGCTTCGGTACAATGTGACGCATCCG
             tacttac  putative branch site (score: 1)
                                             tcttttgc  putative PPT
                     tttttttttcttgtta  TA-rich tract