1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TATTCATCGTCTTCATCATTCTGATCATCGTGACTGCGTTCATCACCATCGCTCTCACGTATTTCCAGCTCGCAATCGAAGATCACGAATGGTGGTGGAGgtaagctttttctcgttctctctttctgatggaagaactcaaatcaatcgctcgctcgcag
species | Selaginella moellendorffii |
transcript | EFJ35228 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GCTCTCACGTATTTCCAGCTCGCAATCGAAGATCACGAATGGTGGTGGAG GTCGGTCTTTTGTGGTGGATCCACTGGCCTGTTTGTCTACGGCTACTGTTAEST: gi|169102228|gb|FE507037.1|FE507037
genomic: GCTCTCACGTATTTCCAGCTCGCAATCGAAGATCACGAATGGTGGTGGAGgtaagctttt ... tcgctcgcagGTCGGTCTTTTGTGGTGGATCCACTGGCCTGTTCGTCTACGGCTACTGTTA
EST: GCTCTCACGTATTTCCAGCTCGCAATCGAAGATCACGAATGGTGGTGGAG GTCGGTCTTTTGTGGTGGATCCACTGGCCTGTTTGTCTACGGCTACTGTTAEST: gi|169057180|gb|FE464691.1|FE464691
genomic: GCTCTCACGTATTTCCAGCTCGCAATCGAAGATCACGAATGGTGGTGGAGgtaagctttt ... tcgctcgcagGTCGGTCTTTTGTGGTGGATCCACTGGCCTGTTCGTCTACGGCTACTGTTA
EST: GCTCTCACGTATTTCCAGCTCGCAATCGAAGATCACGAATGGTGGTGGAG GTCGGTCTTTTGTGGTGGATCCACTGGCCTGTTTGTCTACGGCTACTGTTAEST: gi|169115630|gb|FE517840.1|FE517840
genomic: GCTCTCACGTATTTCCAGCTCGCAATCGAAGATCACGAATGGTGGTGGAGgtaagctttt ... tcgctcgcagGTCGGTCTTTTGTGGTGGATCCACTGGCCTGTTCGTCTACGGCTACTGTTA
EST: GCTCTCACGTATTTCCAGCTCGCAATCGAAGATCACGAATGGTGGTGGAG GTCGGTCTTTTGTGGTGGATCCACTGGCCTGTTCGTCTACGGCTACTGTTAEST: gi|169095825|gb|FE498906.1|FE498906
genomic: GCTCTCACGTATTTCCAGCTCGCAATCGAAGATCACGAATGGTGGTGGAGgtaagctttt ... tcgctcgcagGTCGGTCTTTTGTGGTGGATCCACTGGCCTGTTCGTCTACGGCTACTGTTA
EST: GCTCTCACGTATTTCCAGCTCGCAATCGAAGATCACGAATGGTGGTGGAG GTCGGTCTTTTGTGGTGGATCCACTGGCCTGTTCGTCTACGGCTACTGTTAEST: gi|169023366|gb|FE430042.1|FE430042
genomic: GCTCTCACGTATTTCCAGCTCGCAATCGAAGATCACGAATGGTGGTGGAGgtaagctttt ... tcgctcgcagGTCGGTCTTTTGTGGTGGATCCACTGGCCTGTTCGTCTACGGCTACTGTTA
EST: GCTCTCACGTATTTCCAGCTCGCAATCGAAGATCACGAATGGTGGTGGAG GTCGGTCTTTTGTGGTGGATCCACTGGCCTGTTCGTCTACGGCTACTGTTAEST: gi|169111316|gb|FE510891.1|FE510891
genomic: GCTCTCACGTATTTCCAGCTCGCAATCGAAGATCACGAATGGTGGTGGAGgtaagctttt ... tcgctcgcagGTCGGTCTTTTGTGGTGGATCCACTGGCCTGTTCGTCTACGGCTACTGTTA
EST: GCTCTCACGTATTTCCAGCTCGCAATCGAAGATCACGAATGGTGGTGGAG GTCGGTCTTTTGTGGTGGATCCACTGGCCTGTTCGTCTACGGCTACTGTTAEST: gi|169024462|gb|FE434387.1|FE434387
genomic: GCTCTCACGTATTTCCAGCTCGCAATCGAAGATCACGAATGGTGGTGGAGgtaagctttt ... tcgctcgcagGTCGGTCTTTTGTGGTGGATCCACTGGCCTGTTCGTCTACGGCTACTGTTA
EST: GCTCTCACGTATTTCCAGCTCGCAATCGAAGATCACGAATGGTGGTGGAG GTCGGTCTTTTGTGGTGGATCCACTGGCCTGTTTGTCTACGGCTACTGTTAEST: gi|169111317|gb|FE510892.1|FE510892
genomic: GCTCTCACGTATTTCCAGCTCGCAATCGAAGATCACGAATGGTGGTGGAGgtaagctttt ... tcgctcgcagGTCGGTCTTTTGTGGTGGATCCACTGGCCTGTTCGTCTACGGCTACTGTTA
EST: GCTCTCACGTATTTCCAGCTCGCAATCGAAGATCACGAATGGTGGTGGAG GTCGGTCTTTTGTGGTGGATCCACTGGCCTGTTCGTCTACGGCTACTGTTA
genomic: GCTCTCACGTATTTCCAGCTCGCAATCGAAGATCACGAATGGTGGTGGAGgtaagctttt ... tcgctcgcagGTCGGTCTTTTGTGGTGGATCCACTGGCCTGTTCGTCTACGGCTACTGTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTCATCGTCTTCATCATTCTGATCATCGTGACTGCGTTCATCACCATCGCTCTCACGTATTTCCAGCTCGCAATCGAAGATCACGAATGGTGGTGGAGgtaagctttttctcgttctctctttctgatggaagaactcaaatcaatcgctcgctcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG