1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtactaaaatacaaacttgttctatttccttgtttcatttgatcatagctagatcttcttctagGTCGGCGGCTGGAGTGAGAAATACGCGGGGCTAATGCTTGCCACAGTGAGAGGCGCTGGACATATGGTTCCCTTTGACAAACCTGAGCAAGCGTTGCTTT
species | Selaginella moellendorffii |
transcript | EFJ35220 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCAATCTCACCATCACGCAGAAGTGGTATCCTTGGAAGTTCCAAGATCAG GTCGGCGGCTGGAGTGAGAAATACGCGGGGCTAATGCTTGCCACAGTGAGAEST: gi|169099021|gb|FE501755.1|FE501755
genomic: TCAATCTCACCATCACGCAGAAGTGGTATCCTTGGAAGTTCCAAGATCAGgtactaaaat ... cttcttctagGTCGGCGGCTGGAGTGAGAAATACGCGGGGCTAATGCTTGCCACAGTGAGA
EST: TCAATCTCACCATCACGCAGAAGTGGTATCCTTGGAAGTTCCAAGATCAG GTCGGCGGCTGGAGTGAGAAATACGCGGGGCTAATGCTTGCCACAGTGAGA
genomic: TCAATCTCACCATCACGCAGAAGTGGTATCCTTGGAAGTTCCAAGATCAGgtactaaaat ... cttcttctagGTCGGCGGCTGGAGTGAGAAATACGCGGGGCTAATGCTTGCCACAGTGAGA
tacaaacttgttctatttccttgtttcatttgatcatagctagatcttcttctagGTCGGCGGCTGGAGTGAGAAATACGCGGGGCTAATGCTTGCCACAGTGAGAGGCGCTGGACATATGGTTCCCTTTGACAAACCTGAGCAAGCGTTGCTTT
atttgat putative branch site (score: 16)
tcttcttct putative PPT
ttctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactaaaatacaaacttgttctatttccttgtttcatttgatcatagctagatcttcttctagGTCGGCGGCTGGAGTGAGAAATACGCGGGGCTAATGCTTGCCACAGTGAGAGGCGCTGGACATATGGTTCCCTTTGACAAACCTGAGCAAGCGTTGCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG