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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgtttttgatcaagttctggtcttttctgagtcgttctccatgctacagGTGTTGAACGAAGAAACATTTGCAATCATGGTGATCATGGCGTTATTCACGACTTTTATCACGACTCCAATAGTGATGGCGTTGTACAAACCCGCGAGGA

Basic information

species Selaginella moellendorffii
transcript EFJ35151
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ35151 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GLYMA13G02910.1 (Glycine max), 3'ss of exon 2
---------------------------------------------gtatgttgtttttgatcaagttctggtcttttctgagtcgttctccatgc-tacagGTGTTGAACGAAGAAACATTTGCAATCATGGTGATCATGGCGTTATTCACGACTTTTATCACGACTCCAATAGTGATGGCGTTGTACAAACCCGCGAGGA
                                               ||   ||||   ||  |   ||  ||  |  |   ||  |  | |    | |||||  | |||||  || ||||||||||    ||  | ||||| || ||||| ||||| |||||||| ||||||||||||||  |||||||||| ||  |||
tcagagatgatgattagatagtttactctaacaaaagccagaaaatcattcagtttgatattgaaa-ctaatcaatcatatatctcttgcaaaatgtgcagGTACTAAACGACCAAGCATTTGCAATTTGTGTATTAATGGCATTGTTCACCACTTTCATCACGACCCCAATAGTGATGGCAGTGTACAAACCAGCTCGGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatgttgtttttgatcaagttctggtcttttctgagtcgttctccatgctacagGTGTTGAACGAAGAAACATTTGCAATCATGGTGATCATGGCGTTATTCACGACTTTTATCACGACTCCAATAGTGATGGCGTTGTACAAACCCGCGAGGA
         ttttgat  putative branch site (score: 4)
                                     tcgttctcc  putative PPT
     ttgttttt  TA-rich tract