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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactatagtattgacatcacttctttttttcttacgttttttcttttcttttcttttcttttctttttttttttttttggctccagGTGGACACGCCGACAACAGCTTGAAAGTAGTGGCTACTAACAATGCCCGAGTCATTGAAAGCGCAGTTGGTCACTCAAGGCCGATCACTTGCGTTGGATT

Basic information

species Selaginella moellendorffii
transcript EFJ32770
intron # 28
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169080101|gb|FE487935.1|FE487935
EST:     GAGTGATGCGGCTGTGGCAATATCTTCCAACGGAAGGCTATTGTTTACAG                         GTGGACACGCCGACAACAGCTTGAAAGTAGTGGCTACTAACAATGCGCGAG
genomic: GAGTGATGCGGCTGTGGCAATATCTTCCAACGGAAGGCTATTGTTTACAGgtactatagt ... ttggctccagGTGGACACGCCGACAACAGCTTGAAAGTAGTGGCTACTAACAATGCCCGAG
EST: gi|169030360|gb|FE437823.1|FE437823
EST:     GAGTGATGCGGCTGTGGCAATATCTTCCAACGGAAGGCTATTGTTTACAG                         GTGGACACGCCGACAACAGCTTGAAAGTAGTGGCTACTAACAATGCGCGAG
genomic: GAGTGATGCGGCTGTGGCAATATCTTCCAACGGAAGGCTATTGTTTACAGgtactatagt ... ttggctccagGTGGACACGCCGACAACAGCTTGAAAGTAGTGGCTACTAACAATGCCCGAG
EST: gi|169038328|gb|FE443975.1|FE443975
EST:     GAGTGATGCGGCTGTGGCAATATCTTCCAACGGAAGGCTATTGTTTACAG                         GTGGACACGCCGACAACAGCTTGAAAGTAGTGGCTACTAACAATGCGCGAG
genomic: GAGTGATGCGGCTGTGGCAATATCTTCCAACGGAAGGCTATTGTTTACAGgtactatagt ... ttggctccagGTGGACACGCCGACAACAGCTTGAAAGTAGTGGCTACTAACAATGCCCGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacgttttttcttttcttttcttttcttttctttttttttttttttggctccagGTGGACACGCCGACAACAGCTTGAAAGTAGTGGCTACTAACAATGCCCGAGTCATTGAAAGCGCAGTTGGTCACTCAAGGCCGATCACTTGCGTTGGATT
 ttcttac  putative branch site (score: 2)
       ttttcttttcttttct  putative PPT
     ttttttcttttctttt  TA-rich tract