1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtttgctcgtccaactttagttctaaccgactttttgtttcattgtctgctgtagCTTCCCAGCGGATCTTAAGAAGGTGCTCCATCCGATTGTGTGCTGTGCTATAGCTGCAGACCTGGCCGCGTTCTTGCTCGGCCTTTTCACGCAAAGAGGA
species | Selaginella moellendorffii |
transcript | EFJ32572 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGCCTTTTCTACTTGCAGCAACTGTTCTCGGATATATGCTGGGCTCAAG CTTCCCAGCGGATCTTAAGAAGGTGCTCCATCCGATTGTGTGCTGTGCTATEST: gi|169018592|gb|FE427505.1|FE427505
genomic: CTGCCTTTTCTACTTGCAGCAACTGTTCTCGGATATATGCTGGGCTCAAGgtttgctcgt ... tctgctgtagCTTCCCAGCGGATCTTAAGAAGGTGCTCCATCCGATTGTGTGCTGTGCTAT
EST: CTGCCTTTTCTACTTGCAGCAACTGTTCTCGGATATATGCTGGGCTCAAG CTTCCCAGCGGATCTTAAGAAGGTGCTCCATCCGATTGTGTGCTGTGCTATEST: gi|169034307|gb|FE443080.1|FE443080
genomic: CTGCCTTTTCTACTTGCAGCAACTGTTCTCGGATATATGCTGGGCTCAAGgtttgctcgt ... tctgctgtagCTTCCCAGCGGATCTTAAGAAGGTGCTCCATCCGATTGTGTGCTGTGCTAT
EST: CTGCCTTTTCTACTTGCAGCAACTGTTCTCGGATATATGCTGGGCTCAAG CTTCCCAGCGGATCTTAAGAAGGTGCTCCATCCGATTGTGTGCTGTGCTAT
genomic: CTGCCTTTTCTACTTGCAGCAACTGTTCTCGGATATATGCTGGGCTCAAGgtttgctcgt ... tctgctgtagCTTCCCAGCGGATCTTAAGAAGGTGCTCCATCCGATTGTGTGCTGTGCTAT
gtttgctcgtccaactttagttctaaccgactttttgtttcattgtctgctgtagCTTCCCAGCGGATCTTAAGAAGGTGCTCCATCCGATTGTGTGCTGTGCTATAGCTGCAGACCTGGCCGCGTTCTTGCTCGGCCTTTTCACGCAAAGAGGA
ttctaac putative branch site (score: 1)
tttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgctcgtccaactttagttctaaccgactttttgtttcattgtctgctgtagCTTCCCAGCGGATCTTAAGAAGGTGCTCCATCCGATTGTGTGCTGTGCTATAGCTGCAGACCTGGCCGCGTTCTTGCTCGGCCTTTTCACGCAAAGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA