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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtctttcatagcttttcttcgttctttttcgttttcttcgctgatctttcatgtgacacagTTAATGTTCTCGCTTTGAGCCTAGCAAACTTGATCGCGGGATTGATCACGCTCTTCCATAAC

Basic information

species Selaginella moellendorffii
transcript EFJ32560
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169088690|gb|FE495996.1|FE495996
EST:     CACAAGCCTGGCAGTGGTGTCCTCTGGAGCTGGCTCGGGAACCAAAACAA                         TTAATGTTCTCGCTTTGAGCCTAGCAAACTTGATCGCGGGATTGATCACGC
genomic: CACAAGCCTGGCAGTGGTGTCCTCTGGAGCTGGCTCGGGAACCAAAACAAgtatgtcttt ... tgtgacacagTTAATGTTCTCGCTTTGAGCCTAGCAAACTTGATCGCGGGATTGATCACGC
EST: gi|169088691|gb|FE495997.1|FE495997
EST:     CACAAGCCTGGCAGTGGTGTCCTCTGGAGCTGGCTCGGGAACCAAAACAA                         TTAATGTTCTCGCTTTGAGCCTAGCAAACTTGATCGCGGGATTGATCACGC
genomic: CACAAGCCTGGCAGTGGTGTCCTCTGGAGCTGGCTCGGGAACCAAAACAAgtatgtcttt ... tgtgacacagTTAATGTTCTCGCTTTGAGCCTAGCAAACTTGATCGCGGGATTGATCACGC
EST: gi|169036306|gb|FE445723.1|FE445723
EST:     CACGAGCCTGGCAGTGGTGTCCTCTGGAGCTGGCTCGGGAACCAAAACAA                         TTAATGTTCTCGCTTTGAGCCTAGCAAACTTGATCGCGGGATTGATCACGC
genomic: CACAAGCCTGGCAGTGGTGTCCTCTGGAGCTGGCTCGGGAACCAAAACAAgtatgtcttt ... tgtgacacagTTAATGTTCTCGCTTTGAGCCTAGCAAACTTGATCGCGGGATTGATCACGC
EST: gi|169082639|gb|FE486198.1|FE486198
EST:     CACAAGCCTGGCAGTGGTGTCCTCTGGAGCTGGCTCGGGAACCAAAACAA                         TTAATGTTCTCGCTTTGAGCCTAGCAAACTTGATCGCGGGATTGATCACGC
genomic: CACAAGCCTGGCAGTGGTGTCCTCTGGAGCTGGCTCGGGAACCAAAACAAgtatgtcttt ... tgtgacacagTTAATGTTCTCGCTTTGAGCCTAGCAAACTTGATCGCGGGATTGATCACGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catagcttttcttcgttctttttcgttttcttcgctgatctttcatgtgacacagTTAATGTTCTCGCTTTGAGCCTAGCAAACTTGATCGCGGGATTGATCACGCTCTTCCATAAC
                                cgctgat  putative branch site (score: 4)
                                      tctttcat  CT-rich tract
               ttcttttt  TA-rich tract