1 5' 3' |
...tgtttgctctcgccatagcttccgcccaagcaagaagtctttgtttcgttcgtgttttcatagatttagtttgattgatacgagctggttttctttccagGTTTCTATCTGGCTACATGAATTCTTTGGTGGCAGCACTGAAAGCCAAAGGCTACGAGTCCCAGAAAACTCTCTTTGGAGCTCCATACGACTTTCGCTAC
species | Selaginella moellendorffii |
transcript | EFJ32551 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
tcgttcgtgttttcatagatttagtttgattgatacgagctggttttctttccagGTTTCTATCTGGCTACATGAATTCTTTGGTGGCAGCACTGAAAGCCAAAGGCTACGAGTCCCAGAAAACTCTCTTTGGAGCTCCATACGACTTTCGCTAC
gattgat putative branch site (score: 3)
ctggttttctttcc putative PPT
ttttcatagattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtttgctctcgccatagcttccgcccaagcaagaagtctttgtttcgttcgtgttttcatagatttagtttgattgatacgagctggttttctttccagGTTTCTATCTGGCTACATGAATTCTTTGGTGGCAGCACTGAAAGCCAAAGGCTACGAGTCCCAGAAAACTCTCTTTGGAGCTCCATACGACTTTCGCTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- tttgctc
- - - - - - - -tagcttc
- - - - - - - - - - - - - caagcaa
- - - - - - - - - - - - - - - - - - gtctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - ttttcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgagctg