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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCGCATTTTGAATCCCTTGGTGTTCAAATATCGTGGATGAGTGGACCCTGGTTCCTATCTATATTTGTGAACGTCCTACCTTGGGAAAGTGgtcagtacaatttaaatgcatttccactttccgctgatgaaaattaacttgtgcag

Basic information

species Selaginella moellendorffii
transcript EFJ30863
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ30863 (Selaginella moellendorffii), 5'ss of exon 8
lower sequence: GLYMA20G38810.1 (Glycine max), 5'ss of exon 9
TTTCGCATTTTGAATCCCTTGGTGTTCAAATATCGTGGATGAGTGGACCCTGGTTCCTATCTATATTTGTGAACGTCCTACCTTGGGAAAGTGgtcagtacaatttaaatgcatttccact---ttccgctgatgaaaattaacttgtgcag----------------------------------------------------------------------------
     ||| | || |  || || || ||  |  | ||| | | |||||| |||||||| || || ||||||||| | || ||||||||||||||||||     ||||  | | | || | |   |  ||  | | |  |||   |     ||                                                                            
CCAATCATCTGGATTATCTGGGAGTGCAGGTGGCATGGGTTACTGGACCATGGTTCCTGTCCATTTTTGTGAACATGCTTCCTTGGGAAAGTGgtcag---gttttatgttc-tatctattgagtagcgtagcttagtattgcttcacaaagttgccaatgtcaaatgagcatttgtacactattgttcgagcttccttctgatctattgtaattatttggacttcag

upper sequence: EFJ30863 (Selaginella moellendorffii), 5'ss of exon 8
lower sequence: GLYMA10G44110.1 (Glycine max), 5'ss of exon 9
TTTCGCATTTTGAATCCCTTGGTGTTCAAATATCGTGGATGAGTGGACCCTGGTTCCTATCTATATTTGTGAACGTCCTACCTTGGGAAAGTGgtcag----ta--------caatttaaatgcatttccactttccgctgatgaaaattaact-tgtgcag--------------------------------------------------------------
     ||| | || |  || || || ||  |  | ||| | | |||||| |||||||| || || ||||||||| | || ||||||||||||||||||    ||        | |||||   |  |  ||   |    ||    ||| ||  |  |||| |                                                               
CCAATCATCTAGATTATCTGGGAGTGCAGGTGGCATGGGTTACTGGACCATGGTTCCTGTCCATTTTTGTGAACATGCTTCCTTGGGAAAGTGgtcaggttttatgttctatctatttagtagtgtagcctagtcttacttcacaaagttgccaatgtgaaatgagcatttgtacgctattgtttgagcttccttctgatccattgtaattatttggacttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169095960|gb|FE499977.1|FE499977
EST:     TGGACCCTGGTTCCTATCTATATTTGTGAACGTCCTACCTTGGGAAAGTG                         TTTTGAGAGTATGGGATGTCTTGCTTTTTGAAGGCAACCGAACTATGCTTT
genomic: TGGACCCTGGTTCCTATCTATATTTGTGAACGTCCTACCTTGGGAAAGTGgtcagtacaa ... acttgtgcagTTTTGAGAGTATGGGATGTCTTGCTTTTTGAAGGCAACCGAACTATGCTTT