1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gttagtatttttatgcttttgttacaatcacttggttgacgcttgtggaaacagCAACCCAAAAGACTGTCGATGGGCCATCGTCCAAGGATTGGCGTGGTGGAAGGGGTGCTGGCTTCAACATCATCCCGAGCTCAACCGGAGCCGCCAAG
species | Selaginella moellendorffii |
transcript | EFJ30760 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAAGTTCGGCATCGTGGAGGGCCTCATGACCACTGTGCACTCACTAACTG CAACCCAAAAGACTGTCGATGGGCCATCGTCCAAGGATTGGCGTGGTGGAAEST: gi|169058408|gb|FE466305.1|FE466305
genomic: CAAGTTCGGCATCGTGGAGGGCCTCATGACCACTGTGCACTCACTAACTGgttagtattt ... gtggaaacagCAACCCAAAAGACTGTCGATGGGCCATCGTCCAAGGATTGGCGTGGTGGAA
EST: CAAGTTCGGCATCGTGGAGGGCCTCATGACCACTGTGCACTCACTAACTG CAACCCAAAAGACTGTCGATGGGCCATCGTCCAAGGATTGGCGTGGTGGAAEST: gi|169055484|gb|FE465869.1|FE465869
genomic: CAAGTTCGGCATCGTGGAGGGCCTCATGACCACTGTGCACTCACTAACTGgttagtattt ... gtggaaacagCAACCCAAAAGACTGTCGATGGGCCATCGTCCAAGGATTGGCGTGGTGGAA
EST: CAAGTTCGGCATCGTGGAGGGCCTCATGACCACTGTGCACTCACTAACTG CAACCCAAAAGACTGTCGATGGGCCATCGTCCAAGGATTGGCGTGGTGGAAEST: gi|169101963|gb|FE504991.1|FE504991
genomic: CAAGTTCGGCATCGTGGAGGGCCTCATGACCACTGTGCACTCACTAACTGgttagtattt ... gtggaaacagCAACCCAAAAGACTGTCGATGGGCCATCGTCCAAGGATTGGCGTGGTGGAA
EST: CAAGTTCGGCATCGTGGAGGGCCTCATGACCACTGTGCACTCACTAACTG CAACCCAAAAGACTGTCGATGGGCCATCGTCCAAGGATTGGCGTGGTGGAAEST: gi|169067187|gb|FE474955.1|FE474955
genomic: CAAGTTCGGCATCGTGGAGGGCCTCATGACCACTGTGCACTCACTAACTGgttagtattt ... gtggaaacagCAACCCAAAAGACTGTCGATGGGCCATCGTCCAAGGATTGGCGTGGTGGAA
EST: CAAGTTCGGCATCGTGGAGGGCCTCATGACCACTGTGCACTCACTAACTG CAACCCAAAAGACTGTCGATGGGCCATCGTCCAAGGATTGGCGTGGTGGAAEST: gi|169069038|gb|FE477743.1|FE477743
genomic: CAAGTTCGGCATCGTGGAGGGCCTCATGACCACTGTGCACTCACTAACTGgttagtattt ... gtggaaacagCAACCCAAAAGACTGTCGATGGGCCATCGTCCAAGGATTGGCGTGGTGGAA
EST: CAAGTTCGGCATCGTGGAGGGCCTCATGACCACTGTGCACTCACTAACTG CAACCCAAAAGACTGTCGATGGGCCATCGTCCAAGGATTGGCGTGGTGGAAEST: gi|169043069|gb|FE453983.1|FE453983
genomic: CAAGTTCGGCATCGTGGAGGGCCTCATGACCACTGTGCACTCACTAACTGgttagtattt ... gtggaaacagCAACCCAAAAGACTGTCGATGGGCCATCGTCCAAGGATTGGCGTGGTGGAA
EST: CAAGTTCGGCATCGTGGAGGGCCTCATGACCACTGTGCACTCACTAACTG CAACCCAAAAGACTGTCGATGGGCCATCGTCCAAGGATTGGCGTGGTGGAAEST: gi|169069052|gb|FE477744.1|FE477744
genomic: CAAGTTCGGCATCGTGGAGGGCCTCATGACCACTGTGCACTCACTAACTGgttagtattt ... gtggaaacagCAACCCAAAAGACTGTCGATGGGCCATCGTCCAAGGATTGGCGTGGTGGAA
EST: CAAGTTCGGCATCGTGGAGGGCCTCATGACCACTGTGCACTCACTAACTG CAACCCAAAAGACTGTCGATGGGCCATCGTCCAAGGATTGGCGTGGTGGAA
genomic: CAAGTTCGGCATCGTGGAGGGCCTCATGACCACTGTGCACTCACTAACTGgttagtattt ... gtggaaacagCAACCCAAAAGACTGTCGATGGGCCATCGTCCAAGGATTGGCGTGGTGGAA
gttagtatttttatgcttttgttacaatcacttggttgacgcttgtggaaacagCAACCCAAAAGACTGTCGATGGGCCATCGTCCAAGGATTGGCGTGGTGGAAGGGGTGCTGGCTTCAACATCATCCCGAGCTCAACCGGAGCCGCCAAG
ggttgac putative branch site (score: 9)
tatttttatgctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtatttttatgcttttgttacaatcacttggttgacgcttgtggaaacagCAACCCAAAAGACTGTCGATGGGCCATCGTCCAAGGATTGGCGTGGTGGAAGGGGTGCTGGCTTCAACATCATCCCGAGCTCAACCGGAGCCGCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA