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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcttgcatagttctttcatattttttcccgagacttctaaccttggatccttacagGTTCATGGAGCGTTCGCGGGATTTAGTGGAATCACGGTGGGGCTTTGCAACACTCACTACGCTTACTTCCCAATCCCGCAAGTCATCGATCATCCACGAA

Basic information

species Selaginella moellendorffii
transcript EFJ30227
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169088877|gb|FE494415.1|FE494415
EST:     AGGCAAACTCCTCCGACAGTATACTGTGCACCGTTCTTGGCCAGAATGCG                         GTTCATGGAGCGTTCGCGGGATTTAGTGGAATCACGGTGGGGCTTTGCAAC
genomic: AGGCAAACTCCTCCGACAGTATACTGTGCACCGTTCTTGGCCAGAATGCGgtatgcttgc ... atccttacagGTTCATGGAGCGTTCGCGGGATTTAGTGGAATCACGGTGGGGCTTTGCAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgcatagttctttcatattttttcccgagacttctaaccttggatccttacagGTTCATGGAGCGTTCGCGGGATTTAGTGGAATCACGGTGGGGCTTTGCAACACTCACTACGCTTACTTCCCAATCCCGCAAGTCATCGATCATCCACGAA
                                 ttctaac  putative branch site (score: 1)
                                              tccttac  putative PPT
         ttctttcatatttttt  TA-rich tract