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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagcgaaagaaacttcttgctcttgctcttgctctttctcatcgatcgatcgatcgatcttgtcctttgcagGGGAATCTGGGCTGGGCGTACATGCAGCAATCCGATTTCATCGCAGCGGAGGCAGTCTACAG

Basic information

species Selaginella moellendorffii
transcript EFJ30150
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ30150 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: PP1S8_277V6.1 (Physcomitrella patens), 3'ss of exon 4
--------------------------------------------------------------gtcagcgaaagaaacttcttgctcttgctcttgctcttt--ctcatcgatcgatcgatcgatcttgtcctttgcagGGGAATCTGGGCTGGGCGTACATGCAGCAATCCGATTTCATCGCAGCGGAGGCAGTCTACAG
                                                              | |  || ||     |  |||   |||     |   |    ||| | | |   |   ||  |    | | |||||||| ||||| || ||||||||||||||||||||  | ||  | || || || || || || ||
gtaccgagctaacgatccctatttaagggtctcttttaaacttgcttcaatttactggtacaggcgtcgcaaagtcgtgtttggctttgtcacagtcttaaagctcgttgttgactgcgtcctttaaataccttgcagGGTAATCTCGGATGGGCGTACATGCAGCAATCAAAATTTTTGGCTGCTGAAGCCGTGTATAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctcttgctcttgctctttctcatcgatcgatcgatcgatcttgtcctttgcagGGGAATCTGGGCTGGGCGTACATGCAGCAATCCGATTTCATCGCAGCGGAGGCAGTCTACAG
                                        tcttgtccttt  CT-rich tract