1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtggtgtactacatttcaggctttttcatgattctctcacgttcctttcctgttcttttctctctggcagATTAATGACCAACATCCACGCGATGAAGTCCAAGCCCAGGACGAACAAAGTCGCCATAGCCGAGTCGACAGTGGTGAACAGCAACGCGGAGGAGATCCAC
species | Selaginella moellendorffii |
transcript | EFJ30096 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCTGGAAAGATGCTGATGGAGGATTACGAGGGCTACGCAAAGCACGCCAG ATTAATGACCAACATCCACGCGATGAAGTCCAAGCCCAGGACGAACAAAGTEST: gi|169110345|gb|FE512104.1|FE512104
genomic: GCTGGAAAGATGCTGATGGAGGATTACGAGGGCTACGCAAAGCACGCCAGgtaagtggtg ... tctctggcagATTAATGACCAACATCCACGCGATGAAGTCCAAGCCCAGGACGAACAAAGT
EST: GCTGGAAAGATGCTGATGGAGGATTACGAGGGCTACGCAAAGCACGCCAG ATTAATGACCAACATCCACGCGATGAAGTCCAAGCCCAGGACGAACAAAGT
genomic: GCTGGAAAGATGCTGATGGAGGATTACGAGGGCTACGCAAAGCACGCCAGgtaagtggtg ... tctctggcagATTAATGACCAACATCCACGCGATGAAGTCCAAGCCCAGGACGAACAAAGT
tcaggctttttcatgattctctcacgttcctttcctgttcttttctctctggcagATTAATGACCAACATCCACGCGATGAAGTCCAAGCCCAGGACGAACAAAGTCGCCATAGCCGAGTCGACAGTGGTGAACAGCAACGCGGAGGAGATCCAC
ctctcac putative branch site (score: 20)
tgattctctcacgttc CT-rich tract
tttttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtggtgtactacatttcaggctttttcatgattctctcacgttcctttcctgttcttttctctctggcagATTAATGACCAACATCCACGCGATGAAGTCCAAGCCCAGGACGAACAAAGTCGCCATAGCCGAGTCGACAGTGGTGAACAGCAACGCGGAGGAGATCCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC