Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGGCCGCACGAGATGGACTCATGGGACAGTGGGAGACAAACCTAAAGGTGATGGCCTCCAAAGAGCGCCAATACTTGCAACAGCTTGCCAACTACAAGgtagtgtcacttctgtctggaaaaagttccaacgccttttgctttcttttctttacag

Basic information

species Selaginella moellendorffii
transcript EFJ29818
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ08965 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: PP1S249_30V6.1 (Physcomitrella patens), 5'ss of exon 4
AGTGGCCGCACGAGATGGACTCATGGGACAGTGGGAGACAAACCTAAAGGTGATGGCCTCCAAAGAGCGCCAATACTTGCAACAGCTTGCCAACTACAAGgtagtgtca----cttctgtctggaaaaagttc---caacgccttttgctttc----ttttctttacag-------------------------------
 |||||    || || || |  |||   || ||| | || ||||| ||  |||||||||| ||||| || ||||||||||| |||||||| ||||||||||| | || |    |||   ||  ||    || |    |    |||      ||    ||| ||  | |                                
GGTGGCTCTCCGGGAGGGGCCAATGATGCAATGGAACACTAACCTCAAAATGATGGCCTCGAAAGAACGTCAATACTTGCAGCAGCTTGCTAACTACAAGgtggagtgaaattcttacatcccgaggtggtccatgtagtatcttgaaacgtcaggatttgctcaagaaagtgtgtcggggtatgcacttttggagcagg