1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GATGGACGTGGCTACGCTGCTCCTCCGCGTAGATAAAGGCCACTACAGGACGCGCGCCGCCTTCATGCAAGACGTGGAGCTGATACCAGCCAGTGCAAAAgtaattccactcgttctttcctcctcgcttgcgagctaacgttgtgtgcaacag
species | Selaginella moellendorffii |
transcript | EFJ29799 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CGCGCGGCGCCTTCATGCAAGACGTGGAGCTGATACCAGCCAGTGCGAAA AAATATCACGGCGAGGACTACAGCAATCACACCGCTGCTCGGATTGTTAGCEST: gi|169033514|gb|FE442066.1|FE442066
genomic: CGCGCGCCGCCTTCATGCAAGACGTGGAGCTGATACCAGCCAGTGCAAAAgtaattccac ... tgtgcaacagAAATATCACGGCGAGGACTACAGCAATCACACCGCTGCTCGGATTGTTAGC
EST: CGCGCGCCGCCTTCATGCAAGACGTGGAGCTGATACCAGCCAGTGCNNNN NNNTATCACGGCGAGGACTACAGCAATCACACCGCTGCTCGGATTGTTAGCEST: gi|169038878|gb|FE450219.1|FE450219
genomic: CGCGCGCCGCCTTCATGCAAGACGTGGAGCTGATACCAGCCAGTGCAAAAgtaattccac ... tgtgcaacagAAATATCACGGCGAGGACTACAGCAATCACACCGCTGCTCGGATTGTTAGC
EST: CGCGCGGCGCCTTCATGCAAGACGTGGAGCTGATACCAGCCAGTGCGAAA AAATATCACGGCGAGGACTACAGCAATCACACCGCTGCTCGGATTGTTAGCEST: gi|169042769|gb|FE450446.1|FE450446
genomic: CGCGCGCCGCCTTCATGCAAGACGTGGAGCTGATACCAGCCAGTGCAAAAgtaattccac ... tgtgcaacagAAATATCACGGCGAGGACTACAGCAATCACACCGCTGCTCGGATTGTTAGC
EST: CGCGCGCCGCCTTCATGCAAGACGTGGAGCTGATACCAGCCAGTGCNNNN NNNTATCACGGCGAGGACTACAGCAATCACACCGCTGCTCGGATTGTTAGCEST: gi|169040950|gb|FE450081.1|FE450081
genomic: CGCGCGCCGCCTTCATGCAAGACGTGGAGCTGATACCAGCCAGTGCAAAAgtaattccac ... tgtgcaacagAAATATCACGGCGAGGACTACAGCAATCACACCGCTGCTCGGATTGTTAGC
EST: CGCGCGGCGCCTTCATGCAAGACGTGGAGCTGATACCAGCCAGTGCGAAA AAATATCACGGCGAGGACTACAGCAATCACACCGCTGCTCGGATTGTTAGCEST: gi|169033515|gb|FE442067.1|FE442067
genomic: CGCGCGCCGCCTTCATGCAAGACGTGGAGCTGATACCAGCCAGTGCAAAAgtaattccac ... tgtgcaacagAAATATCACGGCGAGGACTACAGCAATCACACCGCTGCTCGGATTGTTAGC
EST: CGCGCGCCGCCTTCATGCAAGACGTGGAGCTGATACCAGCCAGTGCNNNN NNNTATCACGGCGAGGACTACAGCAATCACACCGCTGCTCGGATTGTTAGCEST: gi|169037797|gb|FE442508.1|FE442508
genomic: CGCGCGCCGCCTTCATGCAAGACGTGGAGCTGATACCAGCCAGTGCAAAAgtaattccac ... tgtgcaacagAAATATCACGGCGAGGACTACAGCAATCACACCGCTGCTCGGATTGTTAGC
EST: CGCGCGCCGCCTTCATGCAAGACGTGGAGCTGATACCAGCCAGTGCNNNN NNNTATCACGGCGAGGACTACAGCAATCACACCGCTGCTCGGATTGTTAGCEST: gi|169107066|gb|FE505998.1|FE505998
genomic: CGCGCGCCGCCTTCATGCAAGACGTGGAGCTGATACCAGCCAGTGCAAAAgtaattccac ... tgtgcaacagAAATATCACGGCGAGGACTACAGCAATCACACCGCTGCTCGGATTGTTAGC
EST: CGCGCGCCGCCTTCATGCAAGACGTGGAGCTGATACCAGCCAGTGCNNNN NNNTATCACGGCGAGGACTACAGCAATCACACCGCTGCTCGGATTGTTAGCEST: gi|169059921|gb|FE467283.1|FE467283
genomic: CGCGCGCCGCCTTCATGCAAGACGTGGAGCTGATACCAGCCAGTGCAAAAgtaattccac ... tgtgcaacagAAATATCACGGCGAGGACTACAGCAATCACACCGCTGCTCGGATTGTTAGC
EST: CGCGCGCCGCCTTCATGCAAGACGTGGAGCTGATACCAGCCAGTGCNNNN NNNTATCACGGCGAGGACTACAGCAATCACACCGCTGCTCGGATTGTTAGC
genomic: CGCGCGCCGCCTTCATGCAAGACGTGGAGCTGATACCAGCCAGTGCAAAAgtaattccac ... tgtgcaacagAAATATCACGGCGAGGACTACAGCAATCACACCGCTGCTCGGATTGTTAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGGACGTGGCTACGCTGCTCCTCCGCGTAGATAAAGGCCACTACAGGACGCGCGCCGCCTTCATGCAAGACGTGGAGCTGATACCAGCCAGTGCAAAAgtaattccactcgttctttcctcctcgcttgcgagctaacgttgtgtgcaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT