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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctttgaaaggtttttgatttcatcttgaggattttttctctgaagtggtattgttttttgaggtgttcagAAGCAAGCAGAGATGCTGTTAAATGCTGATGATCTCGATGCTCTGTGGGTTTGTTTACGCGAGAACTGTGTCATTGACGATTCCACTGGAACTGAAAAG

Basic information

species Selaginella moellendorffii
transcript EFJ29777
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ29777 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: GRMZM2G120178_T01 (Zea mays), 3'ss of exon 3
-------------------------gtctttgaaaggtttttgatttcatcttgaggattttttctctgaagtggtattgttttttgaggtgtt-cagAAGCAAGCAGAGATGCTGTTAAATGCTGATGATCTCGATGCTCTGTGGGTTTGTTTACGCGAGAACTGTGTCATTGACGATTCCACTGGAACTGAAAAG
                           ||||     |||  |  |||| | || | || || | |  |    ||||||  |||    |    || ||||| ||| ||||||||||| | |||||||||||||| |||||  ||||||||||| |  | || || ||||| || || ||| | |||||  ||||||||
gtaacataaggccggtgacatgctaagctttatttagttggtattttccttttcatgacttgtgcctta---tggtatcttttcaaaaccaattacagAAACAATCAGAGATGCTGCTGAATGCTGATGATCTTGATGCCATGTGGGTTTGTCTCAGAGAAAATTGTGTAATCGATGATGCTACTGGTGCTGAAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatttcatcttgaggattttttctctgaagtggtattgttttttgaggtgttcagAAGCAAGCAGAGATGCTGTTAAATGCTGATGATCTCGATGCTCTGTGGGTTTGTTTACGCGAGAACTGTGTCATTGACGATTCCACTGGAACTGAAAAG
 ttttgat  putative branch site (score: 4)
                                 tattgtttttt  TA-rich tract