1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagaaacgtatttggtattgataaacttacaactggcatttgcttctgcagGTGGATTTGGAGAAAATTTCTCACAATACGCACGGCTTCGTTGGCGCGGACCTTGCTGCCCTATGCACCGAGGCGGCCCTGCAGTGCATCCGTGAAAAGA
species | Selaginella moellendorffii |
transcript | EFJ29753 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGTTGGAAGTTCTCCGCATCCATACCAAGAACATGAAGCTCGCGGAAGAC GTGGATTTGGAGAAAATTTCTCACAATACGCACGGCTTCGTTGGCGCGGACEST: gi|169099349|gb|FE502122.1|FE502122
genomic: GGTTGGAAGTTCTCCGCATCCATACCAAGAACATGAAGCTCGCGGAAGACgtaagaaacg ... gcttctgcagGTGGATTTGGAGAAAATTTCTCACAATACGCACGGCTTCGTTGGCGCGGAC
EST: GGTTGGAAGTTCTCCGCATCCATACCAAGAACATGAAGCTCGCGGAAGAC GTGGATTTGGAGAAAATTTCTCACAATACGCACGGCTTCGTTGGCGCGGACEST: gi|169024669|gb|FE432839.1|FE432839
genomic: GGTTGGAAGTTCTCCGCATCCATACCAAGAACATGAAGCTCGCGGAAGACgtaagaaacg ... gcttctgcagGTGGATTTGGAGAAAATTTCTCACAATACGCACGGCTTCGTTGGCGCGGAC
EST: GGTTGGAAGTTCTCCGCATCCATACCAAGAACATGAAGCTCGCGGAAGAC GTGGATTTGGAGAAAATTTCTCACAATACGCACGGCTTCGTTGGCGCGGAC
genomic: GGTTGGAAGTTCTCCGCATCCATACCAAGAACATGAAGCTCGCGGAAGACgtaagaaacg ... gcttctgcagGTGGATTTGGAGAAAATTTCTCACAATACGCACGGCTTCGTTGGCGCGGAC
gtaagaaacgtatttggtattgataaacttacaactggcatttgcttctgcagGTGGATTTGGAGAAAATTTCTCACAATACGCACGGCTTCGTTGGCGCGGACCTTGCTGCCCTATGCACCGAGGCGGCCCTGCAGTGCATCCGTGAAAAGA
aacttac putative branch site (score: 30)
tttgcttct putative PPT
tattgataaactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaaacgtatttggtattgataaacttacaactggcatttgcttctgcagGTGGATTTGGAGAAAATTTCTCACAATACGCACGGCTTCGTTGGCGCGGACCTTGCTGCCCTATGCACCGAGGCGGCCCTGCAGTGCATCCGTGAAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG