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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGTCCAAGCCGCATCGGTGCCCACACATCGCCTATCTGTGTCTGCTGCCCGGGAGGCCCAGATTCGGACTTCAAATATAGCACACAGTCCTACACTGGgtatgaaccaacgagcatgagagcaattcgagcaaggtaaattatatagtctttttcatttctttttttgctagaaaaaaaactcag

Basic information

species Selaginella moellendorffii
transcript EFJ27096
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ27096 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GRMZM2G100872_T01 (Zea mays), 5'ss of exon 1
CATGTCCAAGCCGCATCGGTGCCCACACATCGCCTATCTGTGTCTGCTGCCCGGGAGGCCCAGATTCGGACTTCAAATATAGCACACAGTCCTACACTGGgtatgaaccaacgagcatgagagcaattcgagcaaggtaaatt-------atatagtctttttcat---ttctttttttgctagaaaaaaaactcag---------------------------------------
                                    ||||||||| ||||||||| || || || || |||||| | || ||||| || ||||||||||| || ||||| || |||||| | || ||||| ||||||||| ||        |  | |  | | |||   | ||||   ||||   |   |||||                                          
------------------------------------TCTGTGTCTACTGCCCGGGCGGTCCCGACTCCGACTTCGAGTACAGCACGCAATCCTACACTGGATACGAACCCACCAGCATGCGTGCCATTCGGGCAAGgtaatttcactggagtgcattggtgtccatgcttcctttaactgcttttatttaaacttttctgtacctaggagtgcagtgacttcgtgtttgtgttaca