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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgattgagaagaaaatcgcatggcattgttttgtttatggttcttttcgttgctcagTTCTTTCGGGCCCGTACAAGACGTGAGGATTCCTTACCAGCAAAAGAGAATGTTTGGCTTCGTCACCTTTACGTACTCGGAGACCGTACGGACGATCCTG

Basic information

species Selaginella moellendorffii
transcript EFJ24679
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ24679 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: GLYMA09G35980.1 (Glycine max), 3'ss of exon 3
--------------------------------------------------gtatgtgattgagaagaaaatcgcatggcattgttttgtttatggttcttttcgttgctcagTTCTTTCGGGCCCGTACAAGACGTGAGGATTCCTTACCAGCAAAAGAGAATGTTTGGCTTCGTCACCTTTACGTACTCGGAGACCGTACGGACGATCCTG
                                                  ||   |  |||   ||        ||   |   ||  |||| |  |||| || ||||   ||   ||  || || || |||||||||||||| || |||||||| ||| ||||||||||||| || ||||||   ||  | ||||| ||   |   || || 
gttattattgcttaggtttagctgtaactttagcttcgactgggatcattgtgcatagttggtcagcggcagaaatattaac-ttgagtttttaattctgtt-gttga--agCATTTATGGCCCAGTGCAAGACGTGAGGATCCCATACCAGCAGAAGCGAATGTTTGGCTTTGTTACCTTTGTTTATCCAGAGACTGTGAAGCTTATTCTA

upper sequence: EFJ24679 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: GLYMA12G01350.1 (Glycine max), 3'ss of exon 2
---------------------------------gtatgtgattgagaagaaaatcgcatggcattgt--tttgtttatggttctt---ttcgttgctca-gTTCTTTCGGGCCCGTACAAGACGTGAGGATTCCTTACCAGCAAAAGAGAATGTTTGGCTTCGTCACCTTTACGTACTCGGAGACCGTACGGACGATCCTG
                                 |  |  |  ||   ||    ||| ||||||      ||   |||| ||| ||   |  |||| | | |    |  || || || |||||||||||||| || |||||||| ||| |||||||||| || || ||||||   ||  | ||||||||   |   || || 
gttattattgtttaggtttaactttgttaactggggtcagtgtgcatagttggtcg-atggcagaaatattaacttatagtttttatttctgttgttgaagCATATATGGTCCTGTCCAAGACGTGAGGATCCCATACCAGCAGAAGCGAATGTTTGGTTTTGTTACCTTTGTTTATCCAGAGACCGTGAAGCTTATTCTA

upper sequence: EFJ24679 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: GLYMA12G01340.1 (Glycine max), 3'ss of exon 3
-------------------------------------gtatgtgattgagaagaaaatcgcatgg-cattgttttgtttatggttcttttcgttgctca-gTTCTTTCGGGCCCGTACAAGACGTGAGGATTCCTTACCAGCAAAAGAGAATGTTTGGCTTCGTCACCTTTACGTACTCGGAGACCGTACGGACGATCCTG
                                        ||||  |     |  ||| |||     |||   || |   |  || |||  |||| | | |    |  || || || |||||||||||||| || |||||||| ||| |||||||||| || || ||||||   ||  | ||||||||   |   || || 
gttattattgtttaggtttaactttgttaactggggtcagtgtgcatagttggtcaatggcagaaatattaacttata-gtttttatttctgttgttgaagCATATATGGTCCAGTCCAAGACGTGAGGATCCCATACCAGCAGAAGCGAATGTTTGGTTTTGTTACCTTTGTTTATCCAGAGACCGTGAAGCTTATTCTA

upper sequence: EFJ24679 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: AT3G63450.1 (Arabidopsis thaliana), 3'ss of exon 2
gtatgtgattgagaagaaaatcgcatggcattgtt-ttgtttatggttcttttc--------gttgctcagTTCTTTCGGGCCCGTACAAGACGTGAGGATTCCTTACCAGCAAAAGAGAATGTTTGGCTTCGTCACCTTTACGTACTCGGAGACCGTACGGACGATCCTG
||||     |     | ||  |        || || |||  | | ||    ||         || |  |||| | || ||||| || || ||||||||||| ||||||||||| ||||| |||||||| ||||| ||||| | |||| | ||||| ||   ||  || |||
gtattactcttgtttggaacccattcattcttcttgttggatgttgtctacttaaagcaatggtggtgcagTACGTTTGGGCCAGTTCAGGACGTGAGGATACCTTACCAGCAGAAGAGGATGTTTGGGTTCGTGACCTTCATGTACCCAGAGACTGTGAAGAGCATTCTG

upper sequence: EFJ24679 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: AT3G51950.1 (Arabidopsis thaliana), 3'ss of exon 4
----------------------------gtatgtgattgagaagaaaatcgcatggcattgttttgtttatggttcttttcgttgctcagTTCTTTCGGGCCCGTACAAGACGTGAGGATTCCTTACCAGCAAAAGAGAATGTTTGGCTTCGTCACCTTTACGTACTCGGAGACCGTACGGACGATCCTG
                             ||| || |    | | |  |         |    |    | | ||| |  | |||    ||| |||| || || || ||||| |||||||| || || |||||||||||||||||||| || || || |||  |||| | ||||| ||   ||  || || 
gtaatttccaacaaaacacattgaacttttatttggtctgaatgtatgttcttgtatgtgacataagatgttgttatggtggttat--agTACTTTTGGACCAGTTCAAGATGTGAGGATACCATATCAGCAAAAGAGAATGTTTGGTTTTGTGACATTTGTGTACCCTGAGACTGTTAAGAGCATTCTC

upper sequence: EFJ24679 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: Vv06s0061g00150.t01 (Vitis vinifera), 3'ss of exon 2
----------------------gtatgtgattgagaagaaaatcgcatggcattgttttgttta--tggttcttttcgttgctc----agTTCTTTCGGGCCCGTACAAGACGTGAGGATTCCTTACCAGCAAAAGAGAATGTTTGGCTTCGTCACCTTTACGTACTCGGAGACCGTACGGACGATCCTG
                        || |  |  |   |    |||  | |     ||| ||| |  | |||   ||   ||||     |||  ||| ||||| || ||||| ||||||||||| |||||||| ||||| ||||| || |||||||| ||    ||| | ||||| ||   |   ||  | 
gtaattgctacgtgttggttggaaatttcttcaatttggggttcgtgttgtgaaatttagttaacctagttggcttgtgtgcttttgaagTATTTTTGGGCCAGTTCAAGATGTGAGGATTCCATACCAGCAGAAGAGGATGTTCGGATTCGTCACTTTCGTCTACCCCGAGACTGTGAAGCTCATTTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgagaagaaaatcgcatggcattgttttgtttatggttcttttcgttgctcagTTCTTTCGGGCCCGTACAAGACGTGAGGATTCCTTACCAGCAAAAGAGAATGTTTGGCTTCGTCACCTTTACGTACTCGGAGACCGTACGGACGATCCTG
                                      ttcttttcgttgctc  CT-rich tract
                      attgttttgtttat  TA-rich tract