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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGATTGGAACTGGATACTTGTCTGCTTTTCCAACCAGCTTGTTTGATCGTTTCGAAGCTCTGGAGTCTGTTTGGGCACCATACTACACAATTCACAAGgtatagagctttcttgtttttttttttttttcttttcttgaacgtccaacgtagtcctgtttttttgttcccttgaaag

Basic information

species Selaginella moellendorffii
transcript EFJ24537
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ24537 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: LOC_Os02g10190.1 (Oryza sativa), 5'ss of exon 2
AAAGATTGGAACTGGATACTTGTCTGCTTTTCCAACCAGCTTGTTTGATCGTTTCGAAGCTCTGGAGTCTGTTTGGGCACCATACTACACAATTCACAAGgtata---gagctttcttgtttttttttttttttcttttcttgaacgtccaacgtagtcctgttttttt-gttcccttgaaag-------
 ||||| ||| | || |||||||| || || ||  |    || || ||  |  | ||  |  |  || |||||||||| || ||||| |||||||||||||||||   | |  ||   |||  |  | ||  ||  |  ||  |   |  | | | ||| || |   |  || |  ||    |       
GAAGATGGGATCGGGGTACTTGTCGGCCTTCCCCTCGGAGTTCTTCGACAGGGTTGAGTCCATCAAGGCTGTTTGGGCTCCTTACTATACAATTCACAAGgtatatgggggaatttcagttcctagtgttgcttgatcactatattat--atcattgtcttgctacatgagtgcaattcttggtttgcag

upper sequence: EFJ24537 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: PP1S60_268V6.1 (Physcomitrella patens), 5'ss of exon 3
AAAGATTGGAACTGGATACTTGTCTGCTTTTCCAACCAGCTTGTTTGATCGTTTCGAAGCTCTGGAGTCTGTTTGGGCACCATACTACACAATTCACAAGgtataga-gctttcttgtttttttttttttttcttttcttgaacgtccaa--cgtagtcctgtttttttgttcccttgaaag------------------
 |  ||||| || || ||  | ||||| || ||| |    || |||||||||||||||||  | |||| ||||||||| |||||||| ||||| ||||||||| ||| | || |||       ||   |      |  |  | | |  |    | | ||  |    | || | |   ||                     
GAGCATTGGGACGGGCTATCTTTCTGCATTCCCATCTGAATTCTTTGATCGTTTCGAAGCCATTGAGTATGTTTGGGCGCCATACTATACAATACACAAGgtacagacgattacttcaaggcattggatccgtcctggtacatcatttatgttgaattctgggagctgtgatgcagcgatgtatttcacactggtgtgca