1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagaaagagttttttgcctggatgagagaccgttgacgggttttgatgacagCAACAAGGCTCCACGGCAGCGATGCAAATGGAGCTGGAGAGATTGCGATCGGAGCTCCGGCGGGCTCTTAACAATGGCCAGCAGTGGCAGCAATTGCACC
species | Selaginella moellendorffii |
transcript | EFJ24524 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCTACTCTCACAGTATGGTCGCCATGGGAAGACAAATAAGAGAACTAGAG CAACAAGGCTCCACGGCAGCGATGCAAATGGAGCTGGAGAGATTGCGATCGEST: gi|169078119|gb|FE488800.1|FE488800
genomic: GCTACTCTCACAGTATGGTCGCCATGGGAAGACAAATAAGAGAACTAGAGgtaagaaaga ... ttgatgacagCAACAAGGCTCCACGGCAGCGATGCAAATGGAGCTGGAGAGATTGCGATCG
EST: GTTACTCTCACAGTATGGTCGCCATGGGAAGACAAATAAGAGAACTAGAG CAACAAGGCTCCACGGCAGCGATGCAAATGGAGCTGGAGAGATTGCGATCGEST: gi|169059083|gb|FE468228.1|FE468228
genomic: GCTACTCTCACAGTATGGTCGCCATGGGAAGACAAATAAGAGAACTAGAGgtaagaaaga ... ttgatgacagCAACAAGGCTCCACGGCAGCGATGCAAATGGAGCTGGAGAGATTGCGATCG
EST: GCTACTCTCACAGTATGGTCGCCATGGGAAGACAAATAAGAGAACTAGAG CAACAAGGCTCCACGGCAGCGATGCAAATGGAGCTGGAGAGATTGCGATCGEST: gi|169078118|gb|FE488799.1|FE488799
genomic: GCTACTCTCACAGTATGGTCGCCATGGGAAGACAAATAAGAGAACTAGAGgtaagaaaga ... ttgatgacagCAACAAGGCTCCACGGCAGCGATGCAAATGGAGCTGGAGAGATTGCGATCG
EST: GTTACTCTCACAGTATGGTCGCCATGGGAAGACAAATAAGAGAACTAGAG CAACAAGGCTCCACGGCAGCGATGCAAATGGAGCTGGAGAGATTGCGATCG
genomic: GCTACTCTCACAGTATGGTCGCCATGGGAAGACAAATAAGAGAACTAGAGgtaagaaaga ... ttgatgacagCAACAAGGCTCCACGGCAGCGATGCAAATGGAGCTGGAGAGATTGCGATCG
gtaagaaagagttttttgcctggatgagagaccgttgacgggttttgatgacagCAACAAGGCTCCACGGCAGCGATGCAAATGGAGCTGGAGAGATTGCGATCGGAGCTCCGGCGGGCTCTTAACAATGGCCAGCAGTGGCAGCAATTGCACC
ttttgat putative branch site (score: 13)
agtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaaagagttttttgcctggatgagagaccgttgacgggttttgatgacagCAACAAGGCTCCACGGCAGCGATGCAAATGGAGCTGGAGAGATTGCGATCGGAGCTCCGGCGGGCTCTTAACAATGGCCAGCAGTGGCAGCAATTGCACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT