1 5' 3' |
...atccagagagtgaacatggatggatcacacctccaaaatctcgtttttgtgtgttcttcttactcgggaactaagtgtttgtgcaacttcgttcttccagGACACGCAGTGGGGAGAGATCACAATGTGTGACGCCGAGAGGCGGCTCGTAGCCAACGCTCTCCTCGACCACTCCAACCACAGGTTCGTGCTCCTCTCGG
species | Selaginella moellendorffii |
transcript | EFJ24010 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
tttgtgtgttcttcttactcgggaactaagtgtttgtgcaacttcgttcttccagGACACGCAGTGGGGAGAGATCACAATGTGTGACGCCGAGAGGCGGCTCGTAGCCAACGCTCTCCTCGACCACTCCAACCACAGGTTCGTGCTCCTCTCGG
ttcttac putative branch site (score: 3)
cttcgttcttcc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atccagagagtgaacatggatggatcacacctccaaaatctcgtttttgtgtgttcttcttactcgggaactaagtgtttgtgcaacttcgttcttccagGACACGCAGTGGGGAGAGATCACAATGTGTGACGCCGAGAGGCGGCTCGTAGCCAACGCTCTCCTCGACCACTCCAACCACAGGTTCGTGCTCCTCTCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - agagagtg
- - - - - - - - - - - - - - acctcca
- - - - - - - - - - - - - - - - - - aatctcg
- - - - - - - - - - - - - - - - - - - - - -tttttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgtgc