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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattatggattttcctatgaactttctgatcccggattttccttctgtagTTTTCGGCTGTTGAGGAGTTGTGGATTCAAGGTCTAGCTGTGTGTACTTTCCGTGGACAGTGGGGGGACAAAACGACCACCGATCCGGCATGGGCAAGCA

Basic information

species Selaginella moellendorffii
transcript EFJ23989
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169086795|gb|FE494120.1|FE494120
EST:     AGGGAAACACGAGCTCAGTTGCAGAGTTGTTCGTGTCATTTTTTGGCCAG                         TTTTCGGCTGTTGAGGAGTTGTGAATTCA-GGTCTAGCTGTGTGTACTTTC
genomic: AGGGAAACACGAGCTCAGTTGCAGAGTTGTTCGTGTCATTTTTTGGCCAGgtattatgga ... ccttctgtagTTTTCGGCTGTTGAGGAGTTGTGGATTCAAGGTCTAGCTGTGTGTACTTTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtattatggattttcctatgaactttctgatcccggattttccttctgtagTTTTCGGCTGTTGAGGAGTTGTGGATTCAAGGTCTAGCTGTGTGTACTTTCCGTGGACAGTGGGGGGACAAAACGACCACCGATCCGGCATGGGCAAGCA
                            ttctgat  putative branch site (score: 3)
                                         ttttccttctgt  putative PPT
     tattat  TA-rich tract