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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGCAGCTATCGATCGGTATTCTGCGAACGATTGTAAGACCTTTGCCTTTTTATTGAGCACTCGCGCTGGGGGATTGGGGATCACTCTCACAGCTgtaagtcagcctttttcttgctgattcaaaataaacatttgcggttttttgtag

Basic information

species Selaginella moellendorffii
transcript EFJ23949
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ23949 (Selaginella moellendorffii), 5'ss of exon 11
lower sequence: PP1S291_20V6.1 (Physcomitrella patens), 5'ss of exon 14
CAGGCAGCTATCGATCGGTATTCTGCGAACGATTGTAAGACCTTTGCCTTTTTATTGAGCACTCGCGCTGGGGGATTGGGGATCACTCTCACAGCTgtaagtcagcctttttcttgctgattcaaaataaacat-ttgcggttttttgtag-----------------------------------------------------------------------------------------------
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---GCAGCTATTGATCGTTACTCGGCGAAAGATAGCAGCATCTTTGTCTTTCTTCTAAGCACTCGTGCTGGAGGATTGGGCATCACTCTTACAGCTgtaagaaaaagaaactctcatc-atttactacatgtttcttgcagttcgctaagtttctcgtaactggaagttttttacatgtaggaagatacactttcgtatgtaagttttgtaagaagtctaaagtgtttgaattacttttgatgcag