Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtgatttctgcgagttgatgtttcttatacgatcgaatggcagGATTTTGCGCAATAACGATATTTCAGGAAAGATCCCATCGGAGTTTGGAAATTTACGGAGTATTGACTTGCT

Basic information

species Selaginella moellendorffii
transcript EFJ23934
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169093649|gb|FE495800.1|FE495800
EST:     GTGACCTAGAACATCTATTGACATT                         GATTTTGCGCAATAACGATATTTCAGGAAAGATCCCATCGGAGTTTGGAAA
genomic: GTGACCTAGAACATCTATTGACATTgtaagtgtga ... cgaatggcagGATTTTGCGCAATAACGATATTTCAGGAAAGATCCCATCGGAGTTTGGAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagtgtgatttctgcgagttgatgtttcttatacgatcgaatggcagGATTTTGCGCAATAACGATATTTCAGGAAAGATCCCATCGGAGTTTGGAAATTTACGGAGTATTGACTTGCT
                        agttgat  putative branch site (score: 5)
                                      tttcttata  TA-rich tract