1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaagttttggtttctaaagttctcaggaatgaaattttgtgctcggttataccagGAATGTCATCCATGGTAGTGACAGTGTCGCAAATGGAGAGCGGGAGATTG
species | Selaginella moellendorffii |
transcript | EFJ23809 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAAGCTGAGCCAGGAACGATACGTGGGGATCTTGCTGTTGCAGTTGGAAG GAATGTCATCCATGGTAGTGACAGTGTCGCAAATGGAGAGCGGGAGATTGEST: gi|169040166|gb|FE448114.1|FE448114
genomic: CAAGCTGAGCCAGGAACGATACGTGGGGATCTTGCTGTTGCAGTTGGAAGgtaaagtttt ... gttataccagGAATGTCATCCATGGTAGTGACAGTGTCGCAAATGGAGAGCGGGAGATTG
EST: CAAGCTGAGCCAGGAACGATACGTGGGGATCTTGCTGTTGCAGTTGGAAG GAATGTCATCCATGGTAGTGACAGTGTCGCAAATGGAGAGCGGGAGATTG
genomic: CAAGCTGAGCCAGGAACGATACGTGGGGATCTTGCTGTTGCAGTTGGAAGgtaaagtttt ... gttataccagGAATGTCATCCATGGTAGTGACAGTGTCGCAAATGGAGAGCGGGAGATTG
aaagttttggtttctaaagttctcaggaatgaaattttgtgctcggttataccagGAATGTCATCCATGGTAGTGACAGTGTCGCAAATGGAGAGCGGGAGATTG
ttctaaa putative branch site (score: 20)
aatgaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagttttggtttctaaagttctcaggaatgaaattttgtgctcggttataccagGAATGTCATCCATGGTAGTGACAGTGTCGCAAATGGAGAGCGGGAGATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT