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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctccggaatttcttttgatatttgagcttttatggttaagacgtggtgatctcatagTATCATGCTGAAGAAAAAGCTATCGAACTTACAATGGATGGCCATAGTTCTGTTGACAGTGGGAACCACAACGAGTCAG

Basic information

species Selaginella moellendorffii
transcript EFJ23737
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169093573|gb|FE496582.1|FE496582
EST:     TACCAGATCATGGGAAATCTCAAGATCGTCACGACTGGCATTCTTTTCCG                         TATCATGCTGAAGAAAAAGCTATCGAACTTACAATGGATGGCCATAGTTCT
genomic: TACCAGATCATGGGAAATCTCAAGATCGTCACGACTGGCATTCTTTTCCGgtaagctccg ... gatctcatagTATCATGCTGAAGAAAAAGCTATCGAACTTACAATGGATGGCCATAGTTCT
EST: gi|169053091|gb|FE462054.1|FE462054
EST:     TACCAGATCATGGGAAATCTCAAGATCGTCACGACTGGCATTCTTTTCCG                         TATCATGCTGAAGAAAAAGCTATCGAACTTACAATGGATGGCCATAGTTCT
genomic: TACCAGATCATGGGAAATCTCAAGATCGTCACGACTGGCATTCTTTTCCGgtaagctccg ... gatctcatagTATCATGCTGAAGAAAAAGCTATCGAACTTACAATGGATGGCCATAGTTCT
EST: gi|169078001|gb|FE487824.1|FE487824
EST:     TACCAGATCATGGGAAATCTCAAGATCGTCACGACTGGCATTCTTTTCCG                         TATCATGCTGAAGAAAAAGCTATCGAACTTACAATGGATGGCCATAGTTCT
genomic: TACCAGATCATGGGAAATCTCAAGATCGTCACGACTGGCATTCTTTTCCGgtaagctccg ... gatctcatagTATCATGCTGAAGAAAAAGCTATCGAACTTACAATGGATGGCCATAGTTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccggaatttcttttgatatttgagcttttatggttaagacgtggtgatctcatagTATCATGCTGAAGAAAAAGCTATCGAACTTACAATGGATGGCCATAGTTCTGTTGACAGTGGGAACCACAACGAGTCAG
          ttttgat  putative branch site (score: 4)
     atttcttttgatattt  TA-rich tract